Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00130
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    39   6e-04
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   3.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.5  
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces...    26   4.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.5  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +2

Query: 341 FSIDGTTYQLANNIG-KDHLHGGINGFNKANWNSTV-----DGTKVIFSYLSKDGEEGYP 502
           F +DG  Y L  N   K  LHGG NGF+K  +   +     D   + F  + KDG  G+P
Sbjct: 433 FEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFP 492

Query: 503 GD 508
            D
Sbjct: 493 SD 494



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 246 SGLDELDGNVNRNTPHLGTTVGRCANRI-GGQISV 347
           +G ++      +  P  G T+GR ANRI  GQ  V
Sbjct: 401 NGFNDFSRYKLKENPFFGATIGRFANRIANGQFEV 435


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 DMQGIVLGNFISNVSNKSPGY 496
           D++ IVLG ++ +   K PGY
Sbjct: 283 DLKDIVLGQYVKSKDGKKPGY 303


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 681 SVYNKDMVVDLLDTSFVASQIKIRMVCQIYN 589
           +VYN + V +LL  + +A Q+ + +VC  Y+
Sbjct: 749 NVYNPEKVKNLLKEAKLADQLPLILVCDRYD 779


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 534 NFISNVSNKSPGYPSSPSFDR*LNITLVPSTVEFQFALLNPLIPP 400
           N + N  +K PG     + D  L I+L+P T+E + AL N L+ P
Sbjct: 529 NAVINGPHKWPGASHIQNEDGTL-ISLMPLTIEQRTALANQLLTP 572


>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 72

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 52  RLNHSF*IINMVTLNVE 102
           RLNHS  +INM  +NVE
Sbjct: 29  RLNHSLQLINMSNMNVE 45


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 124 ETVSKFTWRASDGFSVSVISYGAT 195
           E +S+    A DG++VS+ +YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,863
Number of Sequences: 5004
Number of extensions: 62227
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)