Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00130
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 61 7e-10
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 56 2e-08
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 52 3e-07
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 48 5e-06
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 48 9e-06
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 38 0.006
07_03_0722 + 20946201-20947327,20949531-20950791 30 2.0
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 2.7
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 29 4.7
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 28 8.1
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 28 8.1
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 341 FSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGTKVIFSYLSKDGEEGYPGD 508
F+++G Y LA N G + LHGG+ GF+K W+ + + F Y SKDGEEGYPGD
Sbjct: 84 FTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKDGEEGYPGD 142
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 166 SVSVISYGATIQSIQVPDKYGITSDVVLG 252
+ + ++GATI S+ VPD +G +DVVLG
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLG 43
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 499 PG*FITNITYEVTEDNALHVDFMSXXXXXXXXXXXX-HSYFNLAGHETG 642
PG TY + + L +D + H+Y+NLAGH +G
Sbjct: 140 PGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSG 188
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +2
Query: 341 FSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPG 505
F++DG TY+L N G + LHGG GF+K W + D ++ Y S DGE+G+PG
Sbjct: 105 FTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEHVAGGDSPRITLYYHSFDGEQGFPG 164
Query: 506 DXXXXXXXXXPR 541
D PR
Sbjct: 165 DLDVFVTYELPR 176
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 163 FSVSVISYGATIQSIQVPDKYGITSDVVLG 252
FS+ V ++GATI S+ +PD G +DVVLG
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLG 75
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 341 FSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV----DGTKVIFSYLSKDGEEGYPGD 508
F+++ Y LA N + LHGG GF+K W + + F Y SKDGEEG+PGD
Sbjct: 223 FTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAEYVKGENPSITFKYYSKDGEEGFPGD 282
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 175 VISYGATIQSIQVPDKYGITSDVVLG 252
+ + GAT+ S+ VPD G+ DVVLG
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLG 147
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 320 QQDRRTNFSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKD 484
Q+ R F +DG Y N G++ +HGG GF+K W D + Y S D
Sbjct: 94 QRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKVIWTVKEYVGGGDSPYITLYYRSFD 153
Query: 485 GEEGYPGD 508
GE+G+PGD
Sbjct: 154 GEQGFPGD 161
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 124 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGL 255
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLGL
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGL 72
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +2
Query: 341 FSIDGTTYQLANNIGKDHLHGGINGFNKANWN----STVDGTKVIFSYLSKDGEEGYPG 505
F++ G + N GK+ LHGG GFN+ W+ +T + F Y S DGE+G+PG
Sbjct: 43 FTVKGHAFHTYKNDGKNTLHGGHRGFNQVFWSVRERATGHFPYITFYYRSYDGEQGFPG 101
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 103 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLG 252
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLG 74
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 332 RTNFSIDGTTYQLANNIGKDHLHGGINGF 418
+ F +DG Y L N GK+ LHG + F
Sbjct: 101 KARFVLDGKAYHLYPNDGKNTLHGILEKF 129
>07_03_0722 + 20946201-20947327,20949531-20950791
Length = 795
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -2
Query: 666 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNK 508
D+VV++L V S + + VC+ + L + R H+ + + G F ++S +
Sbjct: 436 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSISGE 488
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 666 DMVVDLLDTSFVASQIKIRMVCQIYNGLFSCRRHKVDMQGIVLGNFISNVSNK 508
D+VV++L V S + + VC+ + L + R H+ + + G F + S +
Sbjct: 18 DLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSSSGE 70
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 73 IINMVTLNVEDFGQHHGETVSKFTWR 150
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 537 GNFISNVSNKSPGYPSSPSFDR 472
GNF+ N + SP P P++DR
Sbjct: 525 GNFVRNTGDVSPRIPGMPAYDR 546
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 269 EREQKHTALRDHGRPLCQQDRRTNFSIDGTTYQLANNIGKDH--LHGGINGFNKANWN 436
ERE ++ +R C+ R +F ++GT +Q+ N + DH H IN + WN
Sbjct: 1704 ERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQV-NEVFADHSSSHNPINIPREQLWN 1760
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 269 EREQKHTALRDHGRPLCQQDRRTNFSIDGTTYQLANNIGKDH--LHGGINGFNKANWN 436
ERE ++ +R C+ R +F ++GT +Q+ N + DH H IN + WN
Sbjct: 1708 ERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQV-NEVFADHSSSHNPINIPREQLWN 1764
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,182,300
Number of Sequences: 37544
Number of extensions: 411467
Number of successful extensions: 903
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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