Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00130
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)                  70   2e-12
SB_28603| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             32   0.51 
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.8  
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
          Length = 326

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +2

Query: 341 FSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPG 505
           F++DG TY LA N G + LHGG+ GFNK  W S+++   V  SY S DGEEG+PG
Sbjct: 126 FTLDGKTYHLAKNNGPNCLHGGLIGFNKVLWQSSIEEDHVKMSYTSHDGEEGFPG 180


>SB_28603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 364 ISRAVDTEIC-PPILLAQR-PTVVPKCGVFL 278
           +SR +D E+C PP+L+  R    +PKCG FL
Sbjct: 11  VSRQMDHEVCRPPLLVKLRGKRRIPKCGAFL 41


>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 175 RTLRSHQMPSM*IL-KPSLHDAVQNPQHSKSPCLLFKTNDSSGHK 44
           RTL   Q+P   I  KP ++ + + PQHS SP  L   N    HK
Sbjct: 189 RTLSKFQVPLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHK 233


>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 261 LDGNVNRNTPHLGTT---VGRCANRIGGQISVSTARLINSLT--TLGKIIYMAGLTDLIR 425
           LDG V R+T          GRC+ R+G   S  + R  N +T  TLGK +    + D + 
Sbjct: 383 LDGFVRRSTSSNSVKEGRFGRCSERLGHSFSTQSIREGNCMTNDTLGKSVSTPVIKDSLS 442

Query: 426 R 428
           R
Sbjct: 443 R 443


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 91  KSPCLLFKTNDSSGHKQLRKQSYVMYAF 8
           K  CL+ + NDS GH + R ++ V+ +F
Sbjct: 208 KQACLVRRANDSQGHLEYRTETSVVSSF 235


>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 206 IDCMVAPYEMTDTEKPSDALHVNFETVSP*CCPKSS 99
           I C    YE+    K  +  H+++   SP CCP  S
Sbjct: 331 IGCCCEEYEIFVNGKVHEQHHLSYNPCSPLCCPGGS 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,517,004
Number of Sequences: 59808
Number of extensions: 491872
Number of successful extensions: 2539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2539
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)