Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00130
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    40   0.002
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    40   0.002
AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a prot...    29   4.2  

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 329 RRTNFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPG 505
           + +    DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PG
Sbjct: 69  KNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPG 128

Query: 506 D 508
           D
Sbjct: 129 D 129



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 160 GFSVSVISYGATIQSIQVPDKYGITSDVVLG 252
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 496 IPG*FITNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 675
           +PG    ++TY V + N L ++  +            H+Y+NL G +T    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 676 NADKITE 696
            AD+  E
Sbjct: 182 EADEFVE 188


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 329 RRTNFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPG 505
           + +    DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PG
Sbjct: 69  KNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPG 128

Query: 506 D 508
           D
Sbjct: 129 D 129



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 160 GFSVSVISYGATIQSIQVPDKYGITSDVVLG 252
           G + +++ +GAT+  +  PDK G   D+VLG
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLG 43



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 496 IPG*FITNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVI 675
           +PG    ++TY V + N L ++  +            H+Y+NL G +T    +  H   +
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEM 181

Query: 676 NADKITE 696
            AD+  E
Sbjct: 182 EADEFVE 188


>AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a protein
           protein 77 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 333 GQISVSTARLINSLTTLGKIIYMAGLTDLIRRIGIPPLTVLK 458
           G+IS+     I+ L  +G+    + +T LI R+ I  +T+LK
Sbjct: 138 GEISIDGITCIDQLREVGQRSQWSKVTSLISRVWIKDMTILK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,371,257
Number of Sequences: 27780
Number of extensions: 358583
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)