Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00128
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    66   5e-12
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    30   0.28 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.38 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   0.50 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    29   0.50 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.5  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   3.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   4.6  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   6.1  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   6.1  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.1  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
 Frame = +2

Query: 245 FLQKTQLKTFFENDIYGNFEC--FPP-STINGVKTTIIYPATDKHIAKFSQQEVHIVLET 415
           FLQ T+L     ND++  F    F   ST+  VK+T+I+PA++ H+ K+S Q+  +V ET
Sbjct: 63  FLQDTKLVE--NNDVFHWFLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCET 120

Query: 416 PELYKELTLPHLEKEQF-NLQWVYNILEGKSE 508
           PE+Y ++T P +E ++   +QWV NIL  K+E
Sbjct: 121 PEMYLKVTKPFIETQRGPQIQWVENILTHKAE 152



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 29/45 (64%)
 Frame = +1

Query: 508 ADRIVHDNKSEKEGFVLLPDLKWDGLTQETLYLLAIVRQRDIKAL 642
           A+RIV ++     GF+++PDLKWD  T   L L+AIV   DI ++
Sbjct: 153 AERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASI 197



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +3

Query: 96  KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDL 230
           K+F  EKIL ++T  K   + GK +++  VAL+L EK AF  N +
Sbjct: 13  KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTI 55



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 636 SLRDLDEQHLPLLKRIRDE 692
           S+RDL  +H+PLL+ IR++
Sbjct: 196 SIRDLKYKHIPLLENIRNK 214


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 284 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 385
           D+Y ++     S INGV  ++IYPA +  I+K S
Sbjct: 34  DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 260 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKE 433
           QL T  ++    + ECF  S+ N  KTT++    +  +  F +  +++   +P+LY+E
Sbjct: 233 QLYTVTDSKARVHLECFGSSSSNN-KTTVLVEGGEVSVHPFKEWLLNLQHTSPDLYEE 289


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 220 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 110
           S+K FF     A+PL ++NFP   A+F+     N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 102 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK 254
           FVLE+ L  N   KT    G+   K+GV L+   K  +  N  S E ++ K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 311 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTL-PHLEKEQFNL 472
           PPS +N  +T + +    + + K++++++ +    PE +  L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 238 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 140
           S L++++++  FFSN  S+  L   +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 582 SYPRDIVFIGYCQTKRHKSLR 644
           SYP D VFIG C   R + LR
Sbjct: 348 SYPIDKVFIGSCTNSRIEDLR 368


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 410 ETPELYKELTLPHLEKEQFNLQWVYNILEGK 502
           + P  Y  LTLP+L  E+  LQ++  + +G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 PKQSLSILTDCHLDCCRFHC 52
           P   LS+L D  + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 638 AFMSLCLTIANKYNVSWVRPSHFRSGRSTNPSFSLLLSCTILSAHFYLLECC 483
           +++   + +AN  +V W   +   S    +P+  LLL   +++A    LECC
Sbjct: 497 SYLPNAIVLANGTSVFWAVATEDSSIYIYSPAGRLLLPPVVVAATPCFLECC 548


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 418 WSLQYNMNFLLAKFSNMLI 362
           WS + N +FLL+KF + LI
Sbjct: 180 WSSEMNYHFLLSKFQSRLI 198


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 296 NFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKE 433
           N    P ST++ V+    + AT++    F + ++ +VLE+  +YK+
Sbjct: 208 NLATSPASTVSRVRALYDFAATEQGELSFKKGDIILVLES--VYKD 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,847
Number of Sequences: 5004
Number of extensions: 61959
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)