Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00128
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   7.0  
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    28   7.0  

>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 263 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 388
           +KTF F  D + +F+ F     +  KT ++ PAT+KH+ + S+
Sbjct: 9   VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50


>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 603 IQCLLGKTVPLQIGEEHKSFLFTFIVMYNSICSLLPSRMLYTHCKLNC 460
           I+CLLG+ + ++ G    SF F    +Y        +R + +HCK  C
Sbjct: 646 IECLLGQDLYVKPGSSWISFSFNGEKIYVRANDHHMTRPICSHCKKRC 693


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,383
Number of Sequences: 28952
Number of extensions: 306924
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)