Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00127
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    42   4e-05
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    38   9e-04
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   1.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   5.0  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   5.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   8.8  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 250 YNVKQHLHVSKNSETGMLEGLPTAWLRLINTQ-ITAAEQSENPDAAIQAVKFHMYTIK 420
           ++ K   HV  N +TG   G+PT W  L+    IT +EQ ++P A + A+ F+  + K
Sbjct: 151 FDPKHVTHVGFNYDTGEFTGMPTEWQALLKVSGITKSEQVQHPQAVLDAMAFYSQSKK 208


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 253 NVKQHLHVSKNSETGMLEGLPTAWLRLI-NTQITAAEQSENPDAAIQAVKFH 405
           N K  +HV  ++E G   GLP  W+ L+ ++ IT  E  E P A IQA+ F+
Sbjct: 134 NPKHQVHVGIDNE-GNYVGLPKEWILLLQSSSITKQECMEEPKAVIQALDFY 184


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 246 IPISVALSSRSLCCFLEKSFPNTP 175
           +P SV   S +LC FL  +FP+ P
Sbjct: 190 LPDSVTADSPALCVFLPLNFPDRP 213


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 428  FFFFIVYMWNFTA*MAASGFSLCSAAVICVFMSRS 324
            F++F    WN    +   G   C+ A++  F +RS
Sbjct: 1324 FYYFFHSFWNMFDVVVTLGSLTCNIAILAKFENRS 1358


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 412 CTCGISRPEWPHQGFRFVRPP 350
           CTC + R E PH+      PP
Sbjct: 144 CTCPLCRKEVPHETVGSAHPP 164


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 265 VVSRCRHPDLRSSLISFLVLLLREKLPE 182
           +  RC  P L  +L + LV  +RE+LP+
Sbjct: 302 IKDRCGTPYLAKTLSNLLVSHIRERLPD 329


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +3

Query: 12   PRKATPILLNLKKTNLYCVASNVAKCSLNEIVKVKW 119
            P +   I   +KK+++   + ++ +  ++E+VK+ W
Sbjct: 1453 PAERAKIRSKMKKSDVVVTSYDICRNDVDELVKIDW 1488


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 LRLINTQITAAEQSENPDAAIQAVKFHMYTIKKKKK 432
           LRL+  Q     Q     +AI+AVK     ++KK+K
Sbjct: 476 LRLLRLQKLKDSQERKKVSAIRAVKLMKEIVEKKQK 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,802
Number of Sequences: 5004
Number of extensions: 39581
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)