Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00127
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   9e-05
SB_56994| Best HMM Match : PBD (HMM E-Value=9.4e-11)                   31   0.31 
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               27   5.0  
SB_14327| Best HMM Match : NHL (HMM E-Value=0)                         27   5.0  
SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)                       27   5.0  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 268 LHVSKNSETGMLEGLPTAWLRLIN-TQITAAEQSENPDAAIQAVKFH 405
           +HV  +  TG   G+P AW RL+  + IT AEQ +NP A +  + F+
Sbjct: 30  IHVGFDPVTGEFTGMPEAWARLLQVSNITQAEQKKNPQAVLDVLNFY 76


>SB_56994| Best HMM Match : PBD (HMM E-Value=9.4e-11)
          Length = 197

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 253 NVKQHLHVSKNSETGMLEGLPTAWLRLINTQ 345
           N +  +HV  + +TG   GLP  W+ ++NT+
Sbjct: 30  NFQHRVHVIVDKDTGQFIGLPPQWIAIMNTK 60


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 301  LEGLPTAWLRLINTQITAAEQS 366
            +E LP AW+ +  TQ+T  E S
Sbjct: 1907 MESLPDAWMNITQTQVTQEELS 1928


>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
          Length = 725

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 229 SYGDRDAYNVKQHLHVSKNSETGMLEGLPTAWLRLINTQITAAEQSENP 375
           +Y D ++        ++ NSET   +  P +W ++ N +    E +  P
Sbjct: 373 AYSDDESIECASDSDINSNSETNFWKSEPESWNQISNVKENQTETNTTP 421


>SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)
          Length = 231

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 262 QHLHVSKNSETGMLEGLPTAWL 327
           +++ +S+ S+T M EGLPT W+
Sbjct: 39  ENMRLSEWSKTAMREGLPTDWM 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,086
Number of Sequences: 59808
Number of extensions: 293204
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)