Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00127
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.16 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 155 MSGRSGRGVFGKLFSKKQHKERD 223
           ++  S +G+F KLF+KK  K++D
Sbjct: 682 LTKNSKQGLFSKLFAKKVKKDKD 704


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -3

Query: 315  WQTF*HTSLGIFTNV*MLFHVVGIPISVALSSRSLCCFLEKSFPNTPRPDR 163
            W  F     G   NV +    + + IS++ S    C F  K +    RP+R
Sbjct: 861  WLAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSPKLYIILIRPER 911


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  EFKKNKSVLCREQCSEVFIE 97
           E+  N+S+  REQ  E++ E
Sbjct: 130 EYPTNRSLFIREQTEEMYRE 149


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 18  KATPILLNLKKTNLYCVASNVAKCSLN 98
           K  PIL+  ++T  Y        C LN
Sbjct: 196 KVAPILVRARETPNYTACPPTLACPLN 222


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 205 LLREKLPEHTTTRSPTHFD*FRSLHIRLGHFTFTISF 95
           +LRE+  +       ++ D  RS  +R+    FTI F
Sbjct: 253 MLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFF 289


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 66  HNTDLFFLNSIK*EWLFW 13
           +N+D+F +      WLFW
Sbjct: 207 YNSDIFAMIGTIFLWLFW 224


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 205 LLREKLPEHTTTRSPTHFD*FRSLHIRLGHFTFTISF 95
           +LRE+  +       ++ D  RS  +R+    FTI F
Sbjct: 253 MLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFF 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,796
Number of Sequences: 438
Number of extensions: 2462
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)