Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00127
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci...    29   1.8  
At1g15000.1 68414.m01792 serine carboxypeptidase S10 family prot...    28   2.4  
At2g04850.1 68415.m00500 auxin-responsive protein-related relate...    27   4.1  
At3g21550.1 68416.m02718 expressed protein contains Pfam profile...    27   7.2  
At1g08440.1 68414.m00933 hypothetical protein contains Pfam prof...    26   9.5  

>At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific
           adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific
           adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 207 CFLEKSFPNTPRPDRPLI 154
           CF E+  PN P+P RP++
Sbjct: 100 CFYEQGNPNAPKPHRPVV 117


>At1g15000.1 68414.m01792 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase precursor (SP:P32826)
           [Arabidopsis thaliana]; similar to GB:AAD42963 from
           [Matricaria chamomilla]
          Length = 444

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 246 IPISVALSSRSLCCFLEKSFPNTPRPDRPLIL 151
           +P+  A  S     F E   P TP PD PL++
Sbjct: 40  LPVKPAPGSSMFYAFYEAQEPTTPLPDTPLLV 71


>At2g04850.1 68415.m00500 auxin-responsive protein-related related
           to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 226 LISFLVLLLREKLPEH-----TTTRSPTHFD*FRSLHIRLGHFTFTISFNEHFATL 74
           ++SFL+LLL  KLPE      TTT +   F+   SL  +     +T  ++ H ATL
Sbjct: 5   ILSFLLLLLATKLPESLAGHCTTTTATKSFEKCISLPTQQASIAWT--YHPHNATL 58


>At3g21550.1 68416.m02718 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 184

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 359 SAAVICVFMSRSHAVGRPSN 300
           S AV  VF SR H +G PS+
Sbjct: 155 SGAVFTVFPSRRHGIGNPSD 174


>At1g08440.1 68414.m00933 hypothetical protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 501

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 143 KSIKMSGRSGRGVFGKLFSKKQHKERDERATEIGMPTT*NNI 268
           K+ K   +S  G  G+    K H + D   T +G   T NN+
Sbjct: 399 KNKKKPSKSNSGSIGQAMPNKSHDDDDHVVTILGDVDTSNNV 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,819
Number of Sequences: 28952
Number of extensions: 203325
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)