Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00126
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    28   1.8  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   4.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   5.5  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.6  

>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 316 NGVKLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 447
           +GV   LS +L S   A GC+ +++   NG+ SY+ + +V  EN
Sbjct: 41  SGVSCQLS-SLTSSNFASGCKISAMPILNGSMSYV-YTNVNLEN 82


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 32  QDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKC 160
           +DG+ Y  V   N+E++ +     + +  KW K DAR F+  C
Sbjct: 428 EDGKFY--VFSRNSENMSVRYPDISVSVSKWKKPDARSFILDC 468


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 44   VYLQVSLGNTEDLII---VGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSA 214
            VY ++SL + + L +   V   R  N+G +  +    FL  C +++ NEV K+  +   A
Sbjct: 1479 VYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFLIDCFMSLYNEV-KSSISPLDA 1537

Query: 215  DIPS 226
            +IP+
Sbjct: 1538 NIPN 1541


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 382 ASLVSFNGTDSYLRFVDVTSENPQLTL-KFK-TAKPNGLLFVYVTGHRP 522
           ++  +F+G +  + ++   + +  L L  F  TA  NGL  ++VTG+ P
Sbjct: 65  STCTAFDGANDLMLYISNNTFDEALPLDNFTITASENGLATIFVTGYSP 113


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 110 CMLGLCQLLSNPLCCLMTPASKPFHLASVMRRN 12
           C++G C   +N     + P  +  HL SV  +N
Sbjct: 237 CLIGACTSSTNATSDAVVPVREILHLPSVQMKN 269


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 328 LDL-SENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 447
           +DL +  ++++G AY      L S +G+D +L     TSEN
Sbjct: 702 MDLGTSEMKNVGRAYPEILEKLSSSSGSDEFLETSSRTSEN 742


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 457 TLKFKTAKPNGLLFVYVT 510
           TLKF TAK NGL+  Y+T
Sbjct: 615 TLKFTTAKYNGLVPHYLT 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,003
Number of Sequences: 5004
Number of extensions: 68709
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)