Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00126
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 35 0.068
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.83
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 31 1.1
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 1.1
SB_12620| Best HMM Match : SecG (HMM E-Value=2.3) 31 1.1
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 31 1.5
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 3.4
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 29 3.4
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23) 29 4.4
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 29 4.4
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.7
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.7
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083) 28 7.7
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 2 EGGYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNE 181
E G F + + +G++ L++++G+ +++D KWHKL RR L + ++VDN
Sbjct: 570 EAGQFMDIFLVNGKLRLRMAIGSCSYAERT-VNGSFSDLKWHKLVIRRELEETVVSVDN- 627
Query: 182 VLKAESNSPSADIPSLDTMNFG 247
+ E SA + + M G
Sbjct: 628 -ITTEPIKCSAQLSKMVAMYAG 648
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 271 VPDRGFDGCMRQISINGVKLDLSENLESIGMAYGCQFASLVSFNGTDSY 417
+P GF GC+R I N DL L+ + GCQ AS D Y
Sbjct: 1199 IPYTGFKGCVRNIKDNHNLYDLKNPLKVVNAPEGCQLASACPECKNDGY 1247
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 14 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 175
F +++++ GRV L VSLG + + +DG+WH + R + + +D
Sbjct: 1090 FIAVVLRGGRVELFVSLGLDPVTVKMDKGPRLDDGEWHTVQVLRNMKDIEIIID 1143
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 14 FFSLLMQDGRVYLQVSLGNTE-DLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLK 190
F ++ + +G+V + GN+ DL G YNDGKWH + + + +VD EV K
Sbjct: 488 FLTIGLLNGKVRFRCDSGNSPLDLETSGVQ--YNDGKWHHVHLDKNGLDITFSVDQEVKK 545
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +2
Query: 8 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVL 187
GY + + + V G + T +Y+DG+W+ L R LA +LTV
Sbjct: 958 GYIYGVYLNMSGVTFYFKSGAQSYALSTNKT-SYSDGRWYNLRLTRGLANATLTVTPVNS 1016
Query: 188 KAESNSPSADIPS 226
+ +S S ++PS
Sbjct: 1017 QGVIDSVSINLPS 1029
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 394 SFNGTDSYLRFVDVTSENP-QLTLKFKTAKPNGLLFVYVTGH 516
SFNG L + D T + ++LKF+T K +GLL V +T H
Sbjct: 1466 SFNGEGQILLYNDFTLPSTFDMSLKFRTVKRSGLLLV-ITNH 1506
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 14 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 175
F +L + + ++ +LG T ++ + RA DGKWH + R K L VD
Sbjct: 3865 FIALEIVERYLWFSYNLGYTGIPEVIKSDRAVTDGKWHHVTVIRDKKKGELLVD 3918
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = +3
Query: 177 TRCSKRSPIRPAPTYRA*TL*TSEGTQRNTASAGSRLRRLYEADQ----HQRSKTGSQ*E 344
+R RSP + R+ + S QR+ + S+ R + + H RS++
Sbjct: 232 SRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSRSRSPRSKR 291
Query: 345 SRIDRHGVWMPVRFVGIVQRY*QLPSLRRRDQREPAADPQVQDRKT*RTPIRLRHRTQT 521
SR R R +RY S RRR R + P+ + R R+P R+R+R+++
Sbjct: 292 SRSPRKRRRSKSRSP---RRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRS 347
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 14 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKA 193
F + + G + +Q+ +G + +G +D +WH+ + +R LT+D E LK
Sbjct: 295 FLLVELHRGVLVMQLDIGAGMLKLSIG--EKLSDARWHRAEIKRARRNVKLTLD-ERLKV 351
Query: 194 ESNSPSADIPSLDTMNF-GGNTKEY 265
+ P PSL N GG + Y
Sbjct: 352 DGTCP----PSLTAFNMQGGEGRVY 372
>SB_12620| Best HMM Match : SecG (HMM E-Value=2.3)
Length = 172
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 618 NDSQWHVLTVT-HNTSALKLVVDDFDYFSTDTAPPPLHILDG 740
ND+ WH + VT N + L D + F++ T P H++ G
Sbjct: 8 NDNHWHYIVVTWSNDAPWSLFKDGVNVFTSSTVLRPGHVIPG 49
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 585 REQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDTAPPPL-HI-LDGVLFHRG 758
+ ++ G + +N +WH ++V N L VDD +T P P H+ LDG++F G
Sbjct: 85 KTEIQLGKDLFN-GKWHTVSVNRNGRLTMLSVDDLS--TTKITPGPYDHLNLDGLIF-IG 140
Query: 759 GL 764
GL
Sbjct: 141 GL 142
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 391 VSFNGTDSYLRFVDVTSENP--QLTLKFKTAKPNGLLF 498
+ +G D Y+RF ++ LTL FKT PNGLLF
Sbjct: 30 LKLSGQD-YVRFEPTATKKTANNLTLSFKTIHPNGLLF 66
>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 139 SPVPCQVLSDRGQRGAQSGVQFAQRRHTELRH 234
+PV C L R + +SG QRRH ++RH
Sbjct: 270 APVTCSSLLSRDRSSRRSGSARIQRRHGDMRH 301
>SB_29586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 779 RSPGLQPAAMKENPVKYVERWRRGVRTEV 693
R+P P A +++P +Y +R RR TEV
Sbjct: 30 RNPSYYPVAREQSPTRYTKRARRSSDTEV 58
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 14 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDA 139
F ++ + G+V VS G T NDG+WH L A
Sbjct: 1483 FIAIELSGGQVRFTVSTGGTPASATSRVDGGLNDGRWHSLTA 1524
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 283 GFDGCMRQISINGVKLDLSENLESIGMAYGC 375
GF GC+R I +NG + D S +YGC
Sbjct: 1014 GFIGCIRNIYVNGQRFDASRT-SGGNASYGC 1043
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 612 TYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDTAPPPLHILDGVLFHRGGL 764
T++D+QWH L +T S L VD S ++ I G + GGL
Sbjct: 1414 TFDDNQWHRLQLTRKDSVGTLTVDGIYTASGSSSGASTFISMGTGVYIGGL 1464
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +2
Query: 20 SLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAES 199
++++++G+ + V ++D +WH+L R + +LTVD + S
Sbjct: 1386 AVVLREGKPWFIFDCQTGPAAFTVSAAVTFDDNQWHRLQLTRKDSVGTLTVDGIYTASGS 1445
Query: 200 NSPSADIPSLDT-MNFGGNTKEYCKCRIEASTVV*GR 307
+S ++ S+ T + GG ++ R + GR
Sbjct: 1446 SSGASTFISMGTGVYIGGLPTDFIITRSDPPAARVGR 1482
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 38 GRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSAD 217
G+V+ LG + R +DG+WH + R +++VDN K ++++ D
Sbjct: 493 GKVFYDSDLGTGRSKVYAEGIRV-DDGEWHSVVITREKKTLAISVDNGRAKGQTDT-RGD 550
Query: 218 IPSLDTMNFGG 250
+D N G
Sbjct: 551 FNKIDLPNSVG 561
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 612 TYNDSQWHVLTVTHNTSALKLVVDDFDY-FSTDTAPPPLHILDG--VLFHRGG---LQAG 773
T ND WH +T + L L VDD ST L + D + H GG L++
Sbjct: 1582 TVNDGDWHHITWSRQYKRLILSVDDVTMEMSTQGEQSVLDVADSEIIYVHIGGFPYLKSS 1641
Query: 774 ATWLS 788
AT LS
Sbjct: 1642 ATGLS 1646
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 38 GRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSAD 217
G+V L LG+ +I T NDG WH + R + L+VD+ ++ + +
Sbjct: 1562 GKVRLTADLGSGPGSVINPMT--VNDGDWHHITWSRQYKRLILSVDDVTMEMSTQGEQSV 1619
Query: 218 IPSLDT 235
+ D+
Sbjct: 1620 LDVADS 1625
>SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23)
Length = 422
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 678 VDDFDYFSTDTAPPPLHILDGVLFHRGGLQAG 773
+D DY PPPL+ L GV H GG+ G
Sbjct: 304 LDMSDYVIGKDGPPPLYDLIGVSNHYGGMGGG 335
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 510 RTQTAIMPDSISLSLVNGKLVVVSQREQLDTGLNTYNDSQWHVLTVTHNTSALKLVVDD 686
RTQT + + I+ +NG V+ +Q + T D+ + ++ N + L V D
Sbjct: 132 RTQTLVTEEEITRKTINGDQVIQTQIYNIPDHKMTTEDANGNTMSYVFNEDGIPLNVTD 190
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 253 HKGILQVPDRGFDGCMRQISINGVKLDLSENLESIGMAYGC 375
+ G LQ R GC+R + +NGV + L +E + ++ GC
Sbjct: 1076 YSGNLQ-SSRNLIGCIRDVKVNGV-VKLPSEIELVRVSMGC 1114
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 244 RREHKGILQVPDRGFDGCMRQISINGVKLDLS 339
R E +G+ + + GF GCM+ +++NG L ++
Sbjct: 1908 RSEGQGV--IVENGFKGCMQNLNVNGKDLPMT 1937
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 29 MQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 175
M G V L++ LG E L++ ND +WH ++ +R L +D
Sbjct: 301 MISGNVVLKMDLGKGE-LVLSAGDGLLNDNRWHWVEIKRRGRHAKLVLD 348
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 8 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVL 187
G F S+ + G V + LG ++ + + G+WH + A R+ SL +D+E
Sbjct: 299 GDFVSIAIVGGNVEFRYDLGYGR--AVIRSKKNITVGQWHTVVAERYRRDGSLILDSEP- 355
Query: 188 KAESNSPSADI 220
+S +P +
Sbjct: 356 AVKSQAPCCSV 366
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 113 DGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSADIPSLDTMNFGGNTKEYC 268
D W L + + A S T ++V+K +S+ + + S F GNT+E C
Sbjct: 1242 DQHWEALTKQAYDAVKSSTNPDKVIKFDSSGGLSQLISDAGKEFKGNTRESC 1293
>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
Length = 902
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = -2
Query: 474 GLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILTEIQFYSVDADLPHT 295
G L+ +R L +V +V+V ++ R S+RH D ++ F +D ++ H
Sbjct: 651 GRHLQVSVRHLDDNVRHLQVSVRHLDDNVRHLQVSVRHLDDNVRHLQVSFRHLDDNVRH- 709
Query: 294 TVEASIRHL 268
++ S+RHL
Sbjct: 710 -LQVSVRHL 717
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,037,731
Number of Sequences: 59808
Number of extensions: 554125
Number of successful extensions: 1574
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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