Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00126
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi... 33 0.29
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 31 1.2
At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1) id... 29 2.7
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 29 4.8
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 29 4.8
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 29 4.8
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 29 4.8
At3g58050.1 68416.m06471 expressed protein 29 4.8
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 29 4.8
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 28 6.3
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 28 6.3
At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase / gibber... 28 6.3
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat... 28 8.4
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)... 28 8.4
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)... 28 8.4
>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 643
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -2
Query: 417 VAVSTVERYQRSELASIRHADRF*ILTEIQFYSVDADLPHTTVEASIRHLQYSFVFPPKF 238
+++S Y R L D F T ++ YS ++D PH +V + ++ FVFP F
Sbjct: 49 ISISDALPYARRLLLCFPEPDAFMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSF 107
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 5 GGYFFSLLMQDGRVYLQVSLGNTEDL--IIVGTTRAYNDGKWHKLDA 139
G F +L ++G V QVS G+ ED+ + +A+++G W K+ A
Sbjct: 68 GKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTA 114
>At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1)
identical to chorismate mutase GB:Z26519 [SP|P42738]
[Arabidopsis thaliana]
Length = 340
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 359 PIDSRFSLRSSFTPLMLIC-LIQPSKPRSGTCSI 261
PI + L S+ + + C L QPSKPRSGT S+
Sbjct: 31 PISTLLPLPSTKSSFSVRCSLPQPSKPRSGTSSV 64
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 707
++ + Q++ T + + + W+ +L+V HN ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 707
++ + Q++ T + + + W+ +L+V HN ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 707
++ + Q++ T + + + W+ +L+V HN ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 567 LVVVSQREQLDTGLNTYNDSQWH---VLTVTHNTSALKLVVDDFDYFSTD 707
++ + Q++ T + + + W+ +L+V HN ++KL V D+D FS D
Sbjct: 206 VLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSAD 255
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 265 LQVPDRGFDGCMRQISINGVK 327
L+VP RGF+G RQ+ +N K
Sbjct: 714 LEVPSRGFNGSNRQLRVNASK 734
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 74 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 160
ED+++ Y +GKWH++ R L +C
Sbjct: 17 EDILLRQCIDKYGEGKWHRVPLRTGLNRC 45
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -2
Query: 303 PHTTVEASIRHLQYSFVFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 124
PH A+ + +Y + P + I G+S AL ++ T +H+ R++ SN+C
Sbjct: 349 PHAAFLATSQ--EYKRMMPGRII----GISVDSSGKQALRMAMQTREQHIRRDKATSNIC 402
Query: 123 HLPSLYARV 97
+L A +
Sbjct: 403 TAQALLANM 411
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -2
Query: 303 PHTTVEASIRHLQYSFVFPPKFIVSKLGMSALGELDSALSTSLSTVREHLARNRRASNLC 124
PH A+ + +Y + P + I G+S AL ++ T +H+ R++ SN+C
Sbjct: 355 PHAAFLATSQ--EYKRMMPGRII----GVSVDSSGKQALRMAMQTREQHIRRDKATSNIC 408
Query: 123 HLPSLYARV 97
+L A +
Sbjct: 409 TAQALLANM 417
>At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase /
gibberellin 3 beta-hydroxylase (GA4) identical to
gibberellin 3 beta-hydroxylase [GI:2160454]
Length = 358
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 603 GLNTYNDSQWHVLTVTHNTSALKLVVDDFDYFSTDTAPPPLHILDGVLFH 752
GL + DS + +NT+ L++ DD + + P L + G LFH
Sbjct: 228 GLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFH 277
>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
similar to 2-oxoglutarate/malate translocator precursor,
spinach, SWISSPROT:Q41364
Length = 557
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 467 NLRVSCGFSLVTSTKRR*LSVPLNDTNEANWHPYAMPIDSRFSLRSSFTPLML 309
+L +S SL K R LS+P ++ N +DSRFSL S P+ L
Sbjct: 3 SLALSGSCSLAFPLKSRSLSLPRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSL 55
>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
contains Pfam profile: PF00249 myb-like DNA-binding
domain ;similar to anther-specific myb-related protein 2
GI:11066263 from [Nicotiana tabacum]
Length = 389
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 74 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 160
ED + R Y +G W+ + + +LA+C
Sbjct: 28 EDETLAAYVREYGEGNWNSVQKKTWLARC 56
>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB75) GI:3941507
Length = 248
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 74 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 160
ED ++ Y +GKWH++ R L +C
Sbjct: 17 EDSLLRQCINKYGEGKWHQVPVRAGLNRC 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,977
Number of Sequences: 28952
Number of extensions: 367838
Number of successful extensions: 999
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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