Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00124X
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 100 3e-22
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 99 4e-22
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 0.98
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.3
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 1.7
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 3.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 5.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.1
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.1
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 99.5 bits (237), Expect = 3e-22
Identities = 48/78 (61%), Positives = 62/78 (79%)
Frame = +2
Query: 239 EEANS*GLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 418
+ A+S VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73 KSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRA 132
Query: 419 PTGKKTVLVQGQRNAREA 472
PTG TVLV+G+++AREA
Sbjct: 133 PTGSNTVLVRGKKHAREA 150
Score = 57.2 bits (132), Expect = 1e-09
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +3
Query: 30 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 209
MGIDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 210 ISVSRLA 230
IS+S++A
Sbjct: 61 ISISKIA 67
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 99.1 bits (236), Expect = 4e-22
Identities = 47/72 (65%), Positives = 59/72 (81%)
Frame = +2
Query: 257 GLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 436
G V+VGTVT+D RL +PK++VAAL T+ ARARIL AGGE+LT DQLALRAPTG T
Sbjct: 79 GKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNT 138
Query: 437 VLVQGQRNAREA 472
VL++G+++AREA
Sbjct: 139 VLLRGKKHAREA 150
Score = 58.4 bits (135), Expect = 6e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +3
Query: 30 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 209
MGIDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 210 ISVSRLA 230
IS+S++A
Sbjct: 61 ISISKIA 67
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 0.98
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 293 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 406
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 394 SKNFSSSSQNACTSFFGNMKSSHRH 320
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 307 VQSHVICDCPHYHGNQTLRV--GFFMWRAKRDTEIGGRLIRL 188
V H+ C+ ++H +L WR D++I RL+RL
Sbjct: 335 VAKHLCCELKYFHHATSLGSVESLIEWRRMTDSKIDPRLVRL 376
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 391 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 278
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -2
Query: 466 TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC 287
+S S + + + +S ST S + S + SSSS+ A +S + SSH+ S
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPV 419
Query: 286 DCPHYHGNQTLR 251
YH + + R
Sbjct: 420 SSAFYHNSTSSR 431
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 4.0
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Frame = +2
Query: 74 HRS*ISRYLLEVTCKALQILGQTYKCQIQSDR--STPALYEPYQPATNLCVSFGAPHEEA 247
HRS I YL + C L +G + I + R + + + T L V F + A
Sbjct: 105 HRSPIHEYLKLIVCSPLYFMGILEETDIVNVRLFESETFAKSFNSITTLSVRFSVKNTPA 164
Query: 248 NS*GLIAVVVGTVTNDVRLYKIPKMTVAALH 340
+ +V + D+ Y+ + LH
Sbjct: 165 QA------IVKIYSKDIEFYEATLAFASKLH 189
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 260 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 436
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 437 VLVQGQRNAREADASL 484
V+G EA A+L
Sbjct: 753 --VEGALELVEAYANL 766
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -2
Query: 415 TKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLRVGFFM 236
T LI + F +Q C + +S RH L++S ++ HG + G F+
Sbjct: 20 TSLALIHNDKFLCCAQGPCLRIYDVSES--RHESDLIKSILLPFHNRIHGMLPCKQGLFV 77
Query: 235 W 233
W
Sbjct: 78 W 78
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 514 VRRAAPGAGPK*RICLTSI-SLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNM 338
V+ A+ +G + + TS S + Y +S ST + + S+ SSSS +S
Sbjct: 722 VKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSSAISTA 781
Query: 337 KSS 329
KSS
Sbjct: 782 KSS 784
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.1
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = -2
Query: 433 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 278
L+A ST S K S + F K S RYL Q IC+ P
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSP 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,267
Number of Sequences: 5004
Number of extensions: 46518
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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