Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00124X
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   8e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   28   5.4  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             27   7.2  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   9.5  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 45/71 (63%), Positives = 58/71 (81%)
 Frame = +2

Query: 263 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVL 442
           I VVVG++T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL
Sbjct: 186 ICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVL 245

Query: 443 VQGQRNAREAD 475
           +QG R AREA+
Sbjct: 246 LQGPRKAREAE 256



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/70 (48%), Positives = 42/70 (60%)
 Frame = +3

Query: 33  GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 212
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 213 SVSRLARHMK 242
           S++RL R MK
Sbjct: 169 SLARLVRKMK 178


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 421 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 311
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +2

Query: 401 QLALRAPTGKKT--VLVQGQRNAREA--DASLWPCSRSSASH 514
           QL +RAPTGK T    V+  R +R+A  +A +  C  +SASH
Sbjct: 412 QLYIRAPTGKATQCAFVRRWRQSRQALVEARVAKCVSASASH 453


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 324 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 443
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 345 VT*RAATVIFGILYSLTSFVTVPTTTAIKP 256
           +T R  T++FGIL  L +     TT  IKP
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKP 645


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 354 LVHAFWLLEEKFLLLISWLFVLRLARRQYW-YKVSEML-VRQMRH 482
           L H  WL +  +L  + WL+ +R      W Y VS +  VR + H
Sbjct: 106 LYHVIWLYDVSWLYHVRWLYYVRWLYHVRWLYHVSWLYHVRWLYH 150


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  SSAHRS*ISRYLLEVTCKALQILGQT 142
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 470 PHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQPKCVHELFR*HEEQP 327
           PHE   +LVP L   + E EE  D + E  L++P  V +    H  +P
Sbjct: 619 PHEPHFELVPPLKKPRCESEE--DDEEEHDLKRPSVVDDTELVHPTEP 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,950
Number of Sequences: 59808
Number of extensions: 365733
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)