Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00124X
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   111   4e-25
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    27   6.2  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   6.2  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  111 bits (266), Expect = 4e-25
 Identities = 54/95 (56%), Positives = 69/95 (72%)
 Frame = +2

Query: 239 EEANS*GLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 418
           ++A +     V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++
Sbjct: 71  QKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKS 130

Query: 419 PTGKKTVLVQGQRNAREADASLWPCSRSSASHTKP 523
           P G+ TV +QG R+AREA+    P      SHTKP
Sbjct: 131 PKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKP 165



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 36/72 (50%), Positives = 45/72 (62%)
 Frame = +3

Query: 30  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 209
           MGIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 210 ISVSRLARHMKK 245
           +S+++LAR ++K
Sbjct: 61  LSLAKLARAVQK 72


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 331 CSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS*GRCVTLALLQEQRV 510
           CS C   ++ T   C    S    + S+C+ +  DS+ + +A  + G C+ +   Q Q+ 
Sbjct: 192 CSRCTNATTTTQASC----SSSGGSTSTCTSYNPDSSSSCAAWAANGFCININYTQAQKK 247

Query: 511 SH 516
           S+
Sbjct: 248 SY 249


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 155 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GLIAVVVGTV-TNDVRLY 307
           + +D S+P+ ++P   +TN   S+  P  E++  G  +  VGTV ++  R Y
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDS-TVGTVDSSQFRAY 166


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 155 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GLIAVVVGTV-TNDVRLY 307
           + +D S+P+ ++P   +TN   S+  P  E++  G  +  VGTV ++  R Y
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDS-TVGTVDSSQFRAY 250


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 357 VHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQMR 479
           VHA  +L  + LL +    +LRLARR+ +Y+      RQ R
Sbjct: 597 VHAVIILCVQTLLTLPVFLLLRLARREKFYESLSDYERQRR 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,839
Number of Sequences: 27780
Number of extensions: 277695
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)