Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00123
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 29 1.1
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 29 1.1
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 28 1.9
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 4.3
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 7.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 7.5
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 26 7.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 10.0
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -1
Query: 796 AFKKDFKIFRHVIFNVALTNMMTDFKITAALINA 695
+FK DF++ R V+ NVA T++ T KI++ ++ +
Sbjct: 134 SFKTDFEVDREVLLNVAKTSLST--KISSKVVES 165
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 698 IDKC--CSYFKISHHICKRYIKNNMAEYFE 781
+++C C FK++HH+C +N E+ E
Sbjct: 74 VNRCPICGSFKLAHHLCSHCFRNIRREFNE 103
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 284 FVFLAMPDLL--VYMYNSVLLLCDETVFCLVLIFYFLPTLCDGIIPLYTL 427
F+F+A L + +Y +E + V IF+F+ C G+IP+ T+
Sbjct: 310 FIFIAFTGTLGLIGIYTPWKKWFNEYKYRSVKIFFFVGLACSGLIPMITM 359
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 607 DYVIRNNLNRQRVAFTPIEANNPELRDFPQLTYTSYFYLP 488
D +IRNN VA T I + ELR F +LT + Y P
Sbjct: 75 DLIIRNNNYLASVALTSISSVGGELR-FEKLTRLASVYAP 113
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 352 DCILPRINILFSTNSLRWYNSIIYTPFGRMCSWQ*DLANFKWYIPKVNKNSSCKLIVENL 531
DC+L + L+S +R + P R C D ++ K + NK + ++VE L
Sbjct: 651 DCLLYDLRTLYSEIEIR-----VSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPL 705
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 67 FKRKKGIKKTCFSLYFYSAASKSTRVSSKNAA 162
F K G F+ YF+SA K R NAA
Sbjct: 476 FGNKAGYTTKSFTPYFWSAQGKQLRYCGNNAA 507
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Frame = +2
Query: 290 FLAMPDLLVYMYNSVLLLCDETVFCLVLIFYFLPTLCDGIIPL--------YTLR-LAAC 442
++ +P + + ++ C + F + +F+F+ ++C +I L +T + + C
Sbjct: 242 WVVVPSKFQFSQKTFIIFCFLSSFIITGVFFFIMSICPMVISLIIAPLWIYFTFKYITTC 301
Query: 443 VHGN 454
+H N
Sbjct: 302 IHAN 305
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 483 NIPFEIGQILLP*THAAKRSVYN 415
N+P++IG +L P T ++ R +N
Sbjct: 423 NLPYDIGILLSPFTSSSSRDTFN 445
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = -3
Query: 329 YYTYILINPALQGRQSLEGYYCSCITAAAL*GVARTSPVWYTFYLG 192
Y Y L G +++ Y+CS + +A +WY+ + G
Sbjct: 292 YIGYENFEAFLSGAHAMDEYFCSTPLEKNIPALAALISIWYSDFFG 337
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 111 VKRKTCFFYSFFPLELLHKKVKKNIFF*CPVSP 13
+ R +F+++FP +L K+ +IF +SP
Sbjct: 437 LSRILLYFFTYFPENILKLKIDTSIFLRLDLSP 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,539
Number of Sequences: 5004
Number of extensions: 72476
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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