Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00123
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0747 - 5773771-5773863,5773960-5774061,5774527-5774610,577... 35 0.091
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714... 34 0.12
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 29 3.4
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 29 4.5
05_01_0252 - 1914060-1914142,1914243-1914345,1914516-1914599,191... 29 6.0
02_05_0442 - 29044736-29046604 29 6.0
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 28 7.9
>01_01_0747 -
5773771-5773863,5773960-5774061,5774527-5774610,
5774777-5774872,5774950-5775000,5775105-5775245,
5775704-5775760,5775845-5775919,5776005-5776277,
5776371-5776430,5776969-5777061,5777227-5777298
Length = 398
Score = 34.7 bits (76), Expect = 0.091
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = -3
Query: 506 ELFLFTL--GIYHLKLAKSYCHEHMRPNGVYIMELYHRRELVE---NKILIRGRIQSRHI 342
+L+++ L G+ ++ CH ++P V + L H+ +L + K+L+ G +I
Sbjct: 161 KLYIYQLFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKVLVPGEPNISYI 220
Query: 341 RAKRYYTYILINPALQGRQSLEGYYCSCITAAAL*G 234
++ Y LI A + S++ + C+ A L G
Sbjct: 221 CSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLG 256
>06_03_0397 +
20370146-20370256,20371223-20371312,20371411-20371470,
20371553-20371825,20371917-20371991,20372074-20372130,
20372820-20372960,20373066-20373116,20373194-20373289,
20373482-20373565,20375739-20375840,20376260-20376331
Length = 403
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -3
Query: 506 ELFLFTL--GIYHLKLAKSYCHEHMRPNGVYIMELYHRRELVE---NKILIRGRIQSRHI 342
+L+++ + G+ ++ CH ++P + + L H+ ++ + K+LI+G +I
Sbjct: 173 KLYMYQIFRGLAYIHTVPGVCHRDIKPQNILVDPLTHQVKVCDFGSAKMLIKGEANISYI 232
Query: 341 RAKRYYTYILINPALQGRQSLEGYYCSCITAAAL*G 234
++ Y LI A + S++ + C+ A L G
Sbjct: 233 CSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLG 268
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 452 CHEHMRPNGVYIMELYHRRELVE---NKILIRGRIQSRHIRAKRYYTYILINPALQGRQS 282
CH ++P + + H+ +L + K+L++G +I ++ Y LI A + +
Sbjct: 207 CHRDIKPQNILVNPHNHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTA 266
Query: 281 LEGYYCSCITAAAL*G 234
++ + C+ A L G
Sbjct: 267 IDVWSAGCVLAELLLG 282
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 599 DSKQLKQAKSCIHADRGKQ 543
DSK+ KQ++SCIH D+ Q
Sbjct: 289 DSKKSKQSESCIHTDKNVQ 307
>05_01_0252 -
1914060-1914142,1914243-1914345,1914516-1914599,
1914687-1914782,1914859-1914909,1915001-1915141,
1915221-1915277,1915396-1915470,1915556-1915828,
1915935-1915994,1916109-1916201,1916281-1916400
Length = 411
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 452 CHEHMRPNGVYIMELYHRRELVE---NKILIRGRIQSRHIRAKRYYTYILINPALQGRQS 282
CH ++P + + H+ +L + K+L++G +I ++ Y LI A + +
Sbjct: 197 CHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTA 256
Query: 281 LEGYYCSCITAAAL*G 234
++ + C+ A L G
Sbjct: 257 IDVWSAGCVLAELLLG 272
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 416 MELYHRRELVEN-KILIRGRIQSRHIRAKRYYTYILINPALQGRQSLEGYYCSCITAAAL 240
MEL H VE +I +R + +R A + + +INPA GR++ GY+ A +
Sbjct: 460 MELVH--SCVEKVRINLRTGVVTRTPLAAGNFDFPVINPAFLGRRNRYGYFGVGDPAPKI 517
Query: 239 *GVAR 225
GVA+
Sbjct: 518 GGVAK 522
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 452 CHEHMRPNGVYIMELYHRRELVE---NKILIRGRIQSRHIRAKRYYTYILINPALQGRQS 282
CH ++P V + H+ ++ + K+L++G +I ++ Y LI A + +
Sbjct: 208 CHRDIKPQNVLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTA 267
Query: 281 LEGYYCSCITAAAL*G 234
++ + C+ A L G
Sbjct: 268 IDLWSTGCVMAELLLG 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,905,310
Number of Sequences: 37544
Number of extensions: 422126
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -