Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00123
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF036688-1|AAB88316.1|  225|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   9.4  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   9.4  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   9.4  

>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 249 RRTVGSCAHIASVVYFLSWAIYQEEFHVTC----GVFRRNSC-RFGCGRIKVKRKTCFFY 85
           ++T G CAH + + YFL ++     F + C      F   SC RF C      +    F+
Sbjct: 195 KKTRGKCAHFSPIFYFLRFSQLLLLFCLLCVFPPRTFMPTSCSRFWCSFFTTHKFVLLFF 254

Query: 84  SFF 76
           S F
Sbjct: 255 SEF 257


>Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical
           protein C41G6.9 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 198 IKSIPHWRCARNS---LQCGGRYTGTVITFEALSSLQCRIY 311
           +K+  H +CARNS   L C G +     +F A+ +L   IY
Sbjct: 46  VKTPSHMKCARNSMLCLHCVGAFVDLFFSFFAIPALNLPIY 86


>Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical
           protein K01B6.2 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 350 ETVFCLVLIFYFLPTLCDGIIPLYTLRLAA 439
           + VF LV  FYF P L   I PL +L +AA
Sbjct: 61  DAVFVLVWAFYFAPVLFFDIKPLQSLAIAA 90


>AF036688-1|AAB88316.1|  225|Caenorhabditis elegans Hypothetical
           protein C24D10.5 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 333 FCSYVTRLYSASY*YFIFYQLSAMV*FHYIHSVWP 437
           FCSY     SA + +F+F   SAM+ F ++  + P
Sbjct: 101 FCSYQRYPISALFSFFVFNATSAMIYFVFVWELQP 135


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 RAKRYYTYILINPALQGRQSLEGYYCSCITAAAL 240
           +A  YY    +N  ++GR ++E  Y +CI  AAL
Sbjct: 307 KALEYYYQQCVNDVVRGRFAMEMRYEACIRLAAL 340


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 RAKRYYTYILINPALQGRQSLEGYYCSCITAAAL 240
           +A  YY    +N  ++GR ++E  Y +CI  AAL
Sbjct: 307 KALEYYYQQCVNDVVRGRFAMEMRYEACIRLAAL 340


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 RAKRYYTYILINPALQGRQSLEGYYCSCITAAAL 240
           +A  YY    +N  ++GR ++E  Y +CI  AAL
Sbjct: 346 KALEYYYQQCVNDVVRGRFAMEMRYEACIRLAAL 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,280
Number of Sequences: 27780
Number of extensions: 406489
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)