Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00121X
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   3.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   4.7  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   8.2  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 ILFDSLNKCVAKRGLICTTVMYYAENYICQRKSGL 337
           ++F  LN C+   G I + V+Y     +C+ K GL
Sbjct: 207 LVFSLLN-CIISYGRISSAVLYSIVEVVCRAKFGL 240


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 449 YLLLK-LGIRRFCIKT-YYILNNKLQYTYYYRHY 354
           YLLL  L +R   IKT  + L+ K+Q +YY  HY
Sbjct: 563 YLLLTVLCMRLNIIKTPSFTLDEKIQESYYMAHY 596


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 116 DYTYKKHITNLI*NYPQHCIGICIYYLEP 30
           DY++ K++ + +  Y    +G+CI +  P
Sbjct: 217 DYSFVKYLASCLEYYYPQSLGVCILHKSP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,515
Number of Sequences: 5004
Number of extensions: 41113
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)