Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00121X
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   4.9  
SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   4.9  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   4.9  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         28   6.5  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              23   7.8  

>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 25.0 bits (52), Expect(2) = 4.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 404 YYILNNKLQYTYYYRHYY 351
           YY       Y YYY HYY
Sbjct: 117 YYYYYYYYYYYYYYHHYY 134



 Score = 21.8 bits (44), Expect(2) = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 377 YTYYYRHYYEKLWVDHFCADIYNFPHN 297
           Y YYY +YY   +  ++    Y + H+
Sbjct: 140 YYYYYYYYYYYYYYYYYYYYYYYYYHS 166


>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 407 TYYILNNKLQYTYYYRH---YYEKLWVDHFCADIYNFPHNT 294
           TYY L +  Q    Y+H    YEKL  +   AD+YN   NT
Sbjct: 238 TYYSLGDNGQAMLNYKHALCIYEKLGEERKQADVYNKIGNT 278


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 365 YRHYYEKLWVDHFCADIYNFPHNTLQ*CILIL 270
           YRHYY + +  H+C   Y   HN +   ++I+
Sbjct: 50  YRHYYHRCYRHHYCC--YRHRHNFIVIVLVII 79


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -2

Query: 479 RKNNVSKVICYLLLKLGIRRFCIKTYYI-LNNKLQYTYYYR--HYYEKLWVDHFCADIYN 309
           R+N ++  +CYLL+K+  R+F   T+++ L+  + + + +     Y +     FC  +YN
Sbjct: 686 RENCLTHPVCYLLMKIKWRKFGWITFFLNLSIYVAFLFCFTALTVYLRSNEQDFCGIVYN 745


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 23.4 bits (48), Expect(2) = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 407 TYYILNNKLQYTYYYRHYY 351
           +YY   +   Y YYY +YY
Sbjct: 2   SYYYYYHYYYYYYYYYYYY 20



 Score = 23.0 bits (47), Expect(2) = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 377 YTYYYRHYYEKLWVDHFC 324
           Y YYY +YY   +  ++C
Sbjct: 16  YYYYYYYYYYYYYYYYYC 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,343
Number of Sequences: 59808
Number of extensions: 272728
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)