Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00121X
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    27   7.5  
U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 392 LKYNKF*CKTGVSLVSAIDNR*LWKHYFCAYCFLSTQIQFMKT*KTLLPIW 544
           L+Y    CKT +SL S +  R LW    C     STQ+        LL I+
Sbjct: 94  LEYRNISCKTNLSLDSYVSER-LWTPNVCFVNSKSTQVHKSPASNILLIIY 143


>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 447 ITDDF----GNIIFARIVFCLLKFNS*KLKKPYCLYGGRAHSPTWVVK 578
           +TDD+    G+I+  +   C L++   + ++  CL GGR HS    V+
Sbjct: 27  LTDDYCKNGGSIVNGKCE-CTLRYEGPQCERERCLNGGRRHSAKGTVR 73


>U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical
           protein ZK563.5 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 392 NNKLQYTYYYRHYYEKLWVDHFCADIYNFPHNTL 291
           N+  + T  +R Y++K W++ +   ++NF   +L
Sbjct: 134 NHHAKDTEPFRKYFDKTWIEIYYVSLHNFLSTSL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,772
Number of Sequences: 27780
Number of extensions: 225565
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)