Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00117
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 40 6e-04
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 31 0.15
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 1.1
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 3.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 4.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 4.3
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 26 5.7
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 5.7
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 26 7.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 7.5
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASK 419
Y P L+AN+ Q+ N F+P +L+V+F N V W +L+ K
Sbjct: 168 YWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLK 213
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 130 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHR 255
FP E + + K++LL++ +FAP AF + EGK R
Sbjct: 94 FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFR 135
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 21 RGWRINQT*SYSRIWFLRIIIWWYSSS 101
R W N T ++SRIW + I +WY S+
Sbjct: 328 RSWFHNVT-NFSRIWVMHISAYWYYSA 353
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 246
+P+ +++++ S SF P A K +E + LM S+Y FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 215 ENACINGAKIKRSNNNFFASGNDADSS 135
ENA N + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 48 SYSRIWFLRIIIWWY 92
++SRIW L I ++WY
Sbjct: 423 NFSRIWILHISVFWY 437
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 5.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 478 WWWMMF*TLLYYN 516
WWWM+F T +Y+
Sbjct: 200 WWWMLFVTASFYH 212
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 SEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHCWVWLGNV-LSKQK 421
SEA I+ L Q+ + +V +F S ++S+++E C +G + S+QK
Sbjct: 327 SEANKLIIGNGLDPQVTLGPVVSKTQFEKIVSYIQSAINEGCKCVVGGLPRSEQK 381
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 704 TICSKQPCFVINIQFLMNTSYLFLH 630
TICS ++N F++N ++++H
Sbjct: 100 TICSNSYSILVNYGFILNMVHMYVH 124
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -1
Query: 266 LQSGL*VFPSNRAKEYRENACINGAKIKRSNNNFFASGN---DADSSGNSLST 117
LQS + PS A++ R+ + +I S+ + FASG+ A SS N LST
Sbjct: 183 LQSSQHIPPSTPAQKLRKKNNFDSFRISNSHISPFASGSFSPFATSSPNFLST 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,055
Number of Sequences: 5004
Number of extensions: 71298
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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