Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00117
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    38   0.007
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    29   4.5  
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    29   4.5  

>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQ 431
           +L  + ANW+    FQ +N  F+P   +VL  N V   W + L+ K  K+
Sbjct: 232 WLSSVIANWQLWIPFQFLNFYFVPQKFQVLAANFVALAWNVILSFKAHKE 281


>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGW 398
           Y  V    WK+  +   IN  ++P  LRVLF + V   W
Sbjct: 97  YASVQLTAWKFWPIVSWINYEYMPLQLRVLFHSFVASCW 135


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRK 443
           Y  V  + W +  +   IN  ++P   RV+F + V   W +FL  + R  S ++
Sbjct: 151 YPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRARAMSLKQ 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,415
Number of Sequences: 37544
Number of extensions: 377228
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)