Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00117
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)           46   4e-05
SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)                 30   2.0  
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)            30   2.6  
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             29   6.1  
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)                     29   6.1  

>SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)
          Length = 101

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = +1

Query: 100 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHR 255
           HYFY  +E   P     F  AKKL ++RLIF+P       Y +A FEGK+++
Sbjct: 10  HYFYNYLEHFVPR-GVPFSKAKKLFIDRLIFSPPFYLLFFYIVAIFEGKSNK 60


>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
          Length = 397

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 312 WLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRK 443
           WL+L +    AF+ P+L V+  N V  G   ++ +KR    +++
Sbjct: 25  WLSLERHFIWAFVAPVLAVILFNFVCLGRTFYVMAKRGSNGRKE 68


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 312 WLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRK 443
           WL+L +    AF+ P+L V+  N V  G   ++ +KR    +++
Sbjct: 777 WLSLERHFIWAFVAPVLAVILFNFVCLGRTFYVMAKRGSNGRKE 820


>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 103 YFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRPL*SNFLHC 282
           Y  +T +    +ES S P+AKK   E    +    ++  + LA F          N  H 
Sbjct: 288 YTVDTSKANIEKESESEPVAKKTKTESATLSKFRLSYCPHRLANFSNLLKDIFGKNAEHI 347

Query: 283 TYQS*KPIG 309
           T+   KP+G
Sbjct: 348 TFGDFKPLG 356


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 279 LYLPVLEANWKWLTLFQVINLAFIPPML 362
           L+  V +A W WL LF VI  A + P +
Sbjct: 394 LHYSVFKAFWDWLILFLVIYTAIVTPYM 421


>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
          Length = 1387

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 235 IEPKNIEKMLALMVQ-RSNVPIITFLQVGMMQILQETAFQLFHRNSEELYHQIIIR 71
           + P  ++++ AL  + RSN  I   L +  +QI+    +++    S+ L H +IIR
Sbjct: 549 VTPLEVKRICALRARMRSNDDIADILDLDQIQIICLKCYRVSLNGSDSLTHGLIIR 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,914,892
Number of Sequences: 59808
Number of extensions: 467425
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)