Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00117
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosi...    28   9.4  
AF036706-1|AAK39287.1|  196|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 QVINLAFIPPMLRVLFMNIVGFGWAMFLA 413
           QV+NL F+P   RV+   +V F W  +L+
Sbjct: 139 QVVNLCFVPLNYRVILNQVVAFFWNCYLS 167


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  SWLENQSDLILFSHLVFTDYYLVVQFLTISMKQLKGCFLKNL 145
           S++EN   L +F  L F+ Y+L   FL  S+     C + NL
Sbjct: 295 SYIENAVSLGIFCPLSFSFYFLSYAFLQTSLIACSKCSIFNL 336


>U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosis
           protein familyprotein 1 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 530 FLYQDQLIVC--SLYPISLY*MKYVFLSELCNMLLNVKISNLYSSR 661
           FL++  LI C  S YP  L     V   ++C++L   ++ N+Y  +
Sbjct: 105 FLHKSPLIFCVVSKYPEQLDQQLEVLFEQICSILSKSQLENVYKKK 150


>AF036706-1|AAK39287.1|  196|Caenorhabditis elegans Hypothetical
           protein T07A9.1 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +2

Query: 251 IGRSEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHCWVWLGNVLSKQKTQA 430
           I RS   F + L    S + + +  P H  +I +        EH  V  G+  + ++  A
Sbjct: 4   ISRSPRIFLLSLGRWNSGISVCWYSPRHPRAIISDPAPRIAREHATVLFGDSHASEENNA 63

Query: 431 ESEERRLNFNINFVFHGG 484
               RR NF+      GG
Sbjct: 64  ---ARRRNFHNKKTSRGG 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,627
Number of Sequences: 27780
Number of extensions: 388579
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)