Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00115
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   148   6e-37
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.2  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   9.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  148 bits (359), Expect = 6e-37
 Identities = 68/106 (64%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDN 393
           K +   E  L    IKE++I+D+FL P LNDEV+K++P QKQTRAG RTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 394 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWGT   + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 33/50 (66%), Positives = 42/50 (84%)
 Frame = +3

Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGVQ 653
           G  +G PHTVP KV+GKCGSVTVRL+PAP G G+V+APV K+ LQ+AG++
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIE 193



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SL  K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 193 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 309
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 152 RAHDHGRDHYRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 480 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 346
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +1

Query: 268 EIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 438
           E    F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A 
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437

Query: 439 TAIRGAIILAKLSVLPV 489
            ++ G   L   S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,466
Number of Sequences: 5004
Number of extensions: 53197
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)