Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00115
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              168   4e-42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.62 
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)              29   3.3  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  28   7.6  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   7.6  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  168 bits (408), Expect = 4e-42
 Identities = 82/104 (78%), Positives = 91/104 (87%), Gaps = 2/104 (1%)
 Frame = +1

Query: 223 QTREHLLVF-FTIKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNG 399
           +T EH+ +F   IKEFEIIDFFLG +L DEVLKIMP QKQTRAG RTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 400 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG +  + HT
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 44/50 (88%), Positives = 46/50 (92%)
 Frame = +3

Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGVQ 653
           G KIGKPHTVPCKVTGKCGS  VRLIPAP GTGIVSAPVPKKLLQMAG++
Sbjct: 119 GNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIE 168



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = +2

Query: 173 WVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
           WVPVTKLGRLV++ KI  LE IYLFSL  K
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 474 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLFRHDL*NLIIQG 295
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 294 RAEEEI 277
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 474 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLFRHDL*NLIIQG 295
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 294 RAEEEI 277
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
          Length = 389

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/72 (22%), Positives = 27/72 (37%)
 Frame = +2

Query: 371 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVQDRKATHRPLQGHR 550
           H +   T   +  W+    R   + +E   ++L  LFY             T  P   H 
Sbjct: 199 HTISTWTIRGVSRWISYLTRCFTVLYEVFHNILYGLFYSITRGEPAYHSYWTMSPYSAHA 258

Query: 551 QVWFCNSPADSC 586
           Q + CN+  ++C
Sbjct: 259 QSYICNTSCEAC 270


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -3

Query: 447 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLFRHDL 316
           N  G  LA  +   N+  +V NG K  + C LS T L L+ HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 168 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYNQ 260
           KSG L     ++F  E   +S+AF C LYN+
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLYNK 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,698,216
Number of Sequences: 59808
Number of extensions: 448864
Number of successful extensions: 1246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)