Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00115
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 155 3e-38
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 154 4e-38
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 153 1e-37
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 153 1e-37
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 153 1e-37
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 153 1e-37
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 44 9e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 32 0.29
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 30 1.5
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.7
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 3.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.7
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 28 6.2
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 28 6.2
At2g37930.1 68415.m04656 expressed protein 28 6.2
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.2
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 8.2
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 155 bits (375), Expect = 3e-38
Identities = 72/104 (69%), Positives = 85/104 (81%), Gaps = 1/104 (0%)
Frame = +1
Query: 220 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNG 399
+Q + L +KE++IID +GP+L DEV+KIMP QKQTRAG RTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 400 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 213
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV G I ++E IYL SL K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 154 bits (374), Expect = 4e-38
Identities = 69/92 (75%), Positives = 82/92 (89%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GPSL DEV+KIMP QKQTRAG RTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+P+RRGYWG + + HT
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 204
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV+EGKI K+E IYL SL K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 153 bits (371), Expect = 1e-37
Identities = 70/92 (76%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMP QKQTRAG RTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 153 bits (371), Expect = 1e-37
Identities = 70/92 (76%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMP QKQTRAG RTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 153 bits (371), Expect = 1e-37
Identities = 70/92 (76%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMP QKQTRAG RTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 153 bits (371), Expect = 1e-37
Identities = 70/92 (76%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMP QKQTRAG RTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGV 650
G KIGKPHTVPCKVTGKCGSVTVR++PAP G+GIV+A VPKK+LQ AG+
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 212
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/62 (29%), Positives = 38/62 (61%)
Frame = +1
Query: 304 DEVLKIMPEQKQTRAGXRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 483
+ V+++ K + G + +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 484 PV 489
V
Sbjct: 209 QV 210
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPSGTGIVSAPVPKKLLQMAGVQ 653
K T P + G G+ V L PA GTG+++ + +L+MAGV+
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVE 258
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 350 PARVCFCSGMIFRTSSFRDGPRKKSMISNSLIVKKTSK 237
P R FCSG+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 180 LSPNSAVLFAKEKSTNSRAF-TCFLYNQRIRDH 275
L ++ FAKE NS ++ TCF+YN IR +
Sbjct: 77 LGTRESLSFAKEVFENSESYGTCFMYNSLIRGY 109
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -1
Query: 521 LSDLVPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRXPAR 342
L L+ Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 341 VCFCSGMIFRTSSFR 297
CF SG + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 631 SFLGTGADTIPVPLGAGISRTVTEPHLPVTLQGTVCGFPILYPSNLF 491
SF V L G LP+ LQG + GF + PSN++
Sbjct: 403 SFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQGAITGFILPLPSNIY 449
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 370 AFVAIGDNNGHIGLGVKCSKE 432
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL----GYKIGKPHT 530
CC W+ +R GC + S+ C+S Y C C S+ LL K+ KP T
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120
>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL----GYKIGKPHT 530
CC W+ +R GC + S+ C+S Y C C S+ LL K+ KP T
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 324
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 525 HTVPCKVTGKCGSVTVRL 578
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 3 LSEPIVQQWRTLLQP 47
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,639
Number of Sequences: 28952
Number of extensions: 299949
Number of successful extensions: 832
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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