Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00111
(720 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 163 3e-39
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 155 1e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 3e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 143 4e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 132 6e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 9e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 121 2e-26
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 116 6e-25
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 114 2e-24
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 112 7e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 107 3e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 87 3e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 83 9e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 77 3e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 74 4e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 70 5e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 69 1e-10
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 67 5e-10
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 63 8e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 61 2e-08
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 56 7e-07
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 56 1e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 2e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 5e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 54 5e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 53 8e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 52 1e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 48 2e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 47 4e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 46 0.001
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 45 0.002
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 41 0.035
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.062
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 38 0.19
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 38 0.33
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;... 35 2.3
UniRef50_A1SIG5 Cluster: GAF domain protein; n=1; Nocardioides s... 34 4.1
UniRef50_A1B0H5 Cluster: Twin-arginine translocation protein, Ta... 33 5.4
UniRef50_Q0C5M9 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_Q5KD01 Cluster: Nucleus protein, putative; n=1; Filobas... 33 9.4
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 163 bits (397), Expect = 3e-39
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
KIV QRL+KVDGKVRTDPTYPAGY
Sbjct: 63 KIVMQRLVKVDGKVRTDPTYPAGY 86
Score = 137 bits (332), Expect = 2e-31
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+++EKT E +RL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTI
Sbjct: 88 DVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTI 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
RYPDPLI NDS+Q+DIA+ KI D G
Sbjct: 148 RYPDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 117 bits (282), Expect = 3e-25
Identities = 52/61 (85%), Positives = 56/61 (91%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGK
Sbjct: 173 IKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGN 232
Query: 690 R 692
+
Sbjct: 233 K 233
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 155 bits (376), Expect = 1e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
KI QR IK+DGKVRTD TYPAG+
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGF 86
Score = 139 bits (337), Expect = 6e-32
Identities = 61/91 (67%), Positives = 73/91 (80%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+SI+KT E +RLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTI
Sbjct: 88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTI 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
RYPDPLIKVND+IQ+D+ T KI D G
Sbjct: 148 RYPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 105 bits (252), Expect = 1e-21
Identities = 41/61 (67%), Positives = 55/61 (90%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 173 IKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGN 232
Query: 690 R 692
+
Sbjct: 233 K 233
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 153 bits (372), Expect = 3e-36
Identities = 69/84 (82%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
KI QR IK+DGKVRTD TYP G+
Sbjct: 63 KICMQRFIKIDGKVRTDITYPTGF 86
Score = 105 bits (252), Expect = 1e-21
Identities = 41/61 (67%), Positives = 55/61 (90%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGK
Sbjct: 205 IKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGN 264
Query: 690 R 692
+
Sbjct: 265 K 265
Score = 83.4 bits (197), Expect(2) = 1e-26
Identities = 34/52 (65%), Positives = 44/52 (84%)
Frame = +1
Query: 352 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI D
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITD 203
Score = 59.7 bits (138), Expect(2) = 1e-26
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAK 354
DV+SI+KT E +RLIYDVKGRFT+HRIT EEAK
Sbjct: 88 DVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 143 bits (346), Expect = 4e-33
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
I+ QR I+VDGKVRTD TYPAG+
Sbjct: 63 SILMQRHIQVDGKVRTDKTYPAGF 86
Score = 122 bits (295), Expect = 7e-27
Identities = 56/94 (59%), Positives = 69/94 (73%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DVVSI KTNE +RL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTI
Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTI 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
RYPDPLIK ND+I+LD+ KI++ G V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232
Query: 690 R 692
+
Sbjct: 233 K 233
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 132 bits (320), Expect = 6e-30
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 3 RGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVT 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
IVK R IK+DGK+RTD YP G+
Sbjct: 63 MIVKNRTIKIDGKIRTDTRYPVGF 86
Score = 100 bits (239), Expect = 4e-20
Identities = 43/84 (51%), Positives = 64/84 (76%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+SI +T E +RL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTI
Sbjct: 88 DVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTI 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMD 507
RYP P ++ ND+I+L++ T KI+D
Sbjct: 148 RYPHPELQANDTIKLNLETGKIVD 171
Score = 91.1 bits (216), Expect = 3e-17
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
+KF+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGK
Sbjct: 173 VKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGK 230
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (294), Expect = 9e-27
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +2
Query: 8 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 187
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 188 VKQRLIKVDGK 220
Q IK+DGK
Sbjct: 65 RMQHFIKMDGK 75
Score = 110 bits (264), Expect = 4e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +1
Query: 304 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 483
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 484 IATTKIMDSSSLSPG 528
+ T KI D G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 101 bits (241), Expect = 2e-20
Identities = 39/57 (68%), Positives = 52/57 (91%)
Frame = +3
Query: 513 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 146 KFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGK 202
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 121 bits (291), Expect = 2e-26
Identities = 59/80 (73%), Positives = 65/80 (81%)
Frame = +2
Query: 5 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 184
GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV K
Sbjct: 15 GPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKK 73
Query: 185 IVKQRLIKVDGKVRTDPTYP 244
I Q IKVDGK+RTD P
Sbjct: 74 ICMQWFIKVDGKIRTDNNLP 93
Score = 111 bits (266), Expect = 2e-23
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = +1
Query: 238 LSCWI*DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 417
L WI DV+SI+K E + LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 418 HDGRTIRYPDPLIKVNDSIQLDIATTKI 501
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
+KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I K
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGN 237
Query: 690 R 692
+
Sbjct: 238 K 238
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 116 bits (279), Expect = 6e-25
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 197 RLIKVDGKVRTDPTYPAG 250
RL+KVDGKVRT+ YP G
Sbjct: 82 RLVKVDGKVRTNYRYPTG 99
Score = 97.1 bits (231), Expect = 4e-19
Identities = 39/82 (47%), Positives = 61/82 (74%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+ + K+NEL+R+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI
Sbjct: 102 DVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTI 161
Query: 436 RYPDPLIKVNDSIQLDIATTKI 501
Y DP ++V+D+++ +I T ++
Sbjct: 162 SYVDPSVRVHDALKFNIKTGEV 183
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +3
Query: 507 LIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
+IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 186 VIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 114 bits (274), Expect = 2e-24
Identities = 52/81 (64%), Positives = 60/81 (74%)
Frame = +2
Query: 11 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 190
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 191 KQRLIKVDGKVRTDPTYPAGY 253
+Q L+ VD R D YPAG+
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGF 83
Score = 83.0 bits (196), Expect = 7e-15
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DVV I KT + +RL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG I
Sbjct: 85 DVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRI 144
Query: 436 RYPDPLIKVNDSIQLDIATTKIMD 507
RYPDP + D+I ++ K +D
Sbjct: 145 RYPDPHTSIGDTIVYNVKEKKCVD 168
Score = 73.7 bits (173), Expect = 4e-12
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +3
Query: 507 LIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
LIK G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 169 LIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 112 bits (270), Expect = 7e-24
Identities = 53/95 (55%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+SI+ T E YR++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTI
Sbjct: 88 DVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTI 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGT-CV 537
R+P+ LIK NDSI LD+ K++D S G+ CV
Sbjct: 148 RFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 112 bits (269), Expect = 1e-23
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L
Sbjct: 3 RGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESL 62
Query: 182 KIVKQRLIKVDGKVRTDPTYPAG 250
I+K+ I VDGKVR D +PAG
Sbjct: 63 NILKKNEIYVDGKVRADKNFPAG 85
Score = 58.4 bits (135), Expect = 2e-07
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IKF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGK
Sbjct: 173 IKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGT 232
Query: 690 R 692
+
Sbjct: 233 K 233
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 107 bits (257), Expect = 3e-22
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DVV IEKT++ +R++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTI
Sbjct: 200 DVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTI 259
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
R+P+P IK+ D+++ D+ KI + + L G
Sbjct: 260 RFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 82.6 bits (195), Expect = 9e-15
Identities = 53/114 (46%), Positives = 64/114 (56%), Gaps = 31/114 (27%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPST 94
RGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 84 RGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQ 143
Query: 95 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 250
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 144 GPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Score = 79.0 bits (186), Expect = 1e-13
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +3
Query: 519 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARR 692
ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+ ++
Sbjct: 288 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKK 345
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +2
Query: 5 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 184
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 185 IVKQRLIKVDGKVRTDPTYPAG 250
I+ ++ IKV+G+VRT+ +P G
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVG 85
Score = 73.7 bits (173), Expect = 4e-12
Identities = 35/84 (41%), Positives = 58/84 (69%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DVVSIEKT E +R++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +I
Sbjct: 88 DVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSI 146
Query: 436 RYPDPLIKVNDSIQLDIATTKIMD 507
R+ DP I + +I++ T+K+++
Sbjct: 147 RFCDPAIDLGYTIKISNETSKVIE 170
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 82.6 bits (195), Expect = 9e-15
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 5 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 182 KIVKQRLIKVDGKVRTDPTYPAGYRMLSQLRR 277
KI+ + I VDG VR +P +P G + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 39.9 bits (89), Expect = 0.062
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = +1
Query: 232 PYLSCWI*DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 411
P I DVV I +T + YR++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 412 VTHDGRT--IRYPDP------LIKVNDSIQLDI 486
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.4 bits (182), Expect = 3e-13
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 182 KIVKQRLIKVDGKVRTDPTYPAG 250
KI++ I +DG R + +PAG
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAG 86
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 504 GLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
G + F G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 178 GHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 73.7 bits (173), Expect = 4e-12
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 17 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 193
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 194 QRLIKVDGKVRTDPTYPAG 250
+ +KVDG VR D +P G
Sbjct: 63 RGYVKVDGVVRRDYKFPVG 81
Score = 36.7 bits (81), Expect = 0.58
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR-- 429
DV+ I T E+YR++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 84 DVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNL 143
Query: 430 -TIRYPDPLIKVNDSIQLDIATTKI 501
T IK DS+ D+ I
Sbjct: 144 ITTLEAGKQIKTFDSVLYDLRNKAI 168
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 70.1 bits (164), Expect = 5e-11
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 197 RLIKVDGKVRTDPTYPAG 250
+KVDGKVR D YP G
Sbjct: 63 GYVKVDGKVRRDYKYPVG 80
Score = 35.5 bits (78), Expect = 1.3
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+ + NE YR+I D RI EA K+C+++ L HDGR I
Sbjct: 83 DVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNI 142
Query: 436 ---RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWG 564
+ + S+ +++ K+MD + P V + V G
Sbjct: 143 IVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVG 188
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 182 KIVKQRLIKVDGKVRTDPTYPAG 250
+I+ R+I+VDG+V TD +P G
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVG 88
Score = 39.5 bits (88), Expect = 0.082
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+ I + YR++ D + I PEEA YKL +++R T HDGR +
Sbjct: 91 DVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +2
Query: 5 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 184
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 185 IVKQRLIKVDGKVRTDPTYPAGY 253
++ + +VDG VR D +P G+
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVGF 87
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 504 GLIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 680
G IKF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
Query: 681 KAR 689
R
Sbjct: 240 LDR 242
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 197 RLIKVDGKVRTDPTYPAG 250
+ VDGKVR D Y G
Sbjct: 65 GKVLVDGKVRKDYRYTVG 82
Score = 36.7 bits (81), Expect = 0.58
Identities = 26/94 (27%), Positives = 42/94 (44%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
D +SI N YR++ + G+F H + +A K+CK+ L HDG T+
Sbjct: 85 DTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTM 142
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
+ K DS+ L + KI + + G+ V
Sbjct: 143 IASND-YKTKDSVILKMPERKIDQHFTYAVGSLV 175
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2
Query: 5 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 184
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 185 IVKQRLIKVDGKVRTDPTYPAGY 253
I+ + VDG+V D +P G+
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGF 87
Score = 56.0 bits (129), Expect = 9e-07
Identities = 31/94 (32%), Positives = 48/94 (51%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
D++ I KT E+YR++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 89 DIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNV 146
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
+ V D I L + +I + L G CV
Sbjct: 147 IIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.4 bits (130), Expect = 7e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 197 RLIKVDGKVRTD 232
R + VDG++ TD
Sbjct: 65 RQVLVDGRIETD 76
Score = 35.5 bits (78), Expect = 1.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+++ + + +R I DV G+ I+ + A KLC+V +T + HDGR I
Sbjct: 85 DVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNI 142
Query: 436 RYPD-PLIKVNDSIQLDIATTKIMDSSSLSPG 528
D L D++ + + + S G
Sbjct: 143 LVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/78 (38%), Positives = 40/78 (51%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 197 RLIKVDGKVRTDPTYPAG 250
+ VDGKVR D YP G
Sbjct: 63 GKVLVDGKVRRDYKYPVG 80
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DVV I + R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 83 DVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI 142
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = +1
Query: 268 IEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 447
IE E YR++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 448 PLIKVNDSIQLDIATTKIMDSSSLSPG 528
KV D + + KI + + PG
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 38.3 bits (85), Expect = 0.19
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 23 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 202
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 203 IKVDGKVRTDPTYPAGY 253
+KVDGK + + G+
Sbjct: 66 VKVDGKTVREKKFAVGF 82
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 23 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 202
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 203 IKVDGKVRTD 232
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
Score = 33.5 bits (73), Expect = 5.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 387
D++S K ++ Y ++ D KGR + I+ + AK +L KV T
Sbjct: 82 DIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 197 RLIKVDGKVRTDPTYPAG 250
+ VDG R D +P G
Sbjct: 63 GKVLVDGISRKDLRFPVG 80
Score = 37.5 bits (83), Expect = 0.33
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
DV+++ NE YR++ D KGR ++++ E KLC++ T L +DG I
Sbjct: 83 DVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNI 141
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
+KFE GNL M+ GG++ G G I+ RE + V I T F T + V +IG+
Sbjct: 166 LKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 52.8 bits (121), Expect = 8e-06
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 197 RLIKVDGKVRTDPTYPAG 250
+ VDG R D +P G
Sbjct: 64 GNVLVDGVARKDLRFPVG 81
Score = 34.3 bits (75), Expect = 3.1
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
IK+E GNL MI GG + G VG+I S + + S F T + VF+IG+++
Sbjct: 167 IKYEVGNLAMIVGGSHAGEVGSIKEINTVKSSKNNT-VTISGEIEFETIEDYVFVIGESK 225
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 187
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 188 VKQRLIKVDGKVRTDPTYPAG 250
+ + VDG+ D +P G
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVG 86
Score = 43.6 bits (98), Expect = 0.005
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRT 432
DV++I + NE YR++ D +G+ + +I EEA K K +++V+ + Y +T DGRT
Sbjct: 89 DVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147
Query: 433 IRYPDPLIKVNDSIQLDIATTKIMD 507
D K + + +I KI +
Sbjct: 148 F-LGDNSYKTHYGVVYEIPNFKIRE 171
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +2
Query: 14 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 193
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 194 QRLIKVDGKVRTD 232
QR + V+G+ D
Sbjct: 62 QRDVLVNGRACKD 74
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
D+VSI K + YR+ DVKG I E AK +LCK++ T L G +
Sbjct: 83 DIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV 142
Query: 436 RYPDPLIKVNDSIQLDIAT 492
D K DS+ + + T
Sbjct: 143 -LADNTYKAKDSVVVTLGT 160
Score = 39.5 bits (88), Expect = 0.082
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKA 686
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G++
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRS 232
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
D +S N+ YR++ G+ T++ I E K+CKV ++ ++T D R +
Sbjct: 88 DTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLREL 147
Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGT-CV*SR 546
+ IKV DS+ + +I+ + G+ C+ +R
Sbjct: 148 KINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = +3
Query: 477 VRHCNYEDYGLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATR 656
++ N E +KFE G+LC+IT G++LG + I + ++H++ G +
Sbjct: 162 IKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221
Query: 657 LNNVFIIGKAR 689
+++ +IG+++
Sbjct: 222 CSDLLVIGESK 232
Score = 39.5 bits (88), Expect = 0.082
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 2 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQ 62
Query: 182 KIVKQRLIKVDGKVRTDPTYP 244
K+VK + V+GK +P
Sbjct: 63 KVVKTGFLYVNGKKCLSHKFP 83
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +2
Query: 17 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 196
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 197 RLIKVDGKVRTDPTYPAG 250
+ ++GK +D P G
Sbjct: 63 DNVLINGKAISDEERPVG 80
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = +2
Query: 23 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 202
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 203 IKVDGKVRTDPTYPAGYRMLSQLRRLMN 286
+KVDG++ D +P G+ + + L N
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLEN 94
Score = 40.3 bits (90), Expect = 0.047
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRT 432
DV+SI+ Y ++YD KG+ I + P KL K VK+ G + L HDG+T
Sbjct: 85 DVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKT 143
Query: 433 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
I I +D + + I +I + ++ G
Sbjct: 144 IVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.7 bits (91), Expect = 0.035
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = -2
Query: 677 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 510
D EHV + R + ++ GVL VHN EG + LA D V + DH Q ++LD
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELD 108
Score = 34.3 bits (75), Expect = 3.1
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = -1
Query: 474 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 295
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 294 TIQFISLLN*DNI 256
FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.062
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 23 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 202
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 203 IKVDGKV 223
+ VDGKV
Sbjct: 66 VMVDGKV 72
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 507 LIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
++KF GN ITGG ++G + TI S E + ++VH+ + F+T + VF++G
Sbjct: 166 VLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMGS 221
Query: 684 AR 689
+
Sbjct: 222 PK 223
Score = 32.7 bits (71), Expect = 9.4
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +1
Query: 289 YRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 468
Y + YD KG+ I E KL +VK + HDG T+ IK D
Sbjct: 93 YLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGD 152
Query: 469 SIQLDIATTKIMDSSSLSPGTCV 537
S+ + I +I+D +PG V
Sbjct: 153 SVLVKIPKKEIVDVLKFAPGNRV 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 38.3 bits (85), Expect = 0.19
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +2
Query: 14 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 193
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 194 QRLIKVDGKVRT 229
++VDG RT
Sbjct: 68 SGNVEVDGVKRT 79
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 37.5 bits (83), Expect = 0.33
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -2
Query: 683 LADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDE 507
LA+ EH+ Q + + G+L+V ++G + L D ++T V ++ H +P +K DE
Sbjct: 117 LANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDE 175
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 539 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGTK 691
DH R A HR R RL + H+G+ L+H++EQ +G K
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;
n=1; Neurospora crassa|Rep: Related to merozoite surface
antigen 2 - Neurospora crassa
Length = 388
Score = 34.7 bits (76), Expect = 2.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 505 DSSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 651
+S+S + T VT G+ P A P+P+T T+ P DTP P
Sbjct: 275 NSTSAAAATAAAPTNEVTDGLRKPDASAEQQPSPTTATTTTPPTDTPKP 323
>UniRef50_A1SIG5 Cluster: GAF domain protein; n=1; Nocardioides sp.
JS614|Rep: GAF domain protein - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 417
Score = 33.9 bits (74), Expect = 4.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 719 LCRAAARCTPSCLADYEHVVQPRGEGVSRGVLDVHNVEGAGMSL--AGHDGAHTPQVTAS 546
+ RAAAR + LA + V+P +RG L V G +L DG +PQ+ S
Sbjct: 184 MVRAAARMAEAELAREQARVRPEAAAPARGTLMVIEALGRSEALLTVTSDGVGSPQLRLS 243
Query: 545 RDHTQV 528
R H+++
Sbjct: 244 RRHSEI 249
>UniRef50_A1B0H5 Cluster: Twin-arginine translocation protein, TatB
subunit; n=1; Paracoccus denitrificans PD1222|Rep:
Twin-arginine translocation protein, TatB subunit -
Paracoccus denitrificans (strain Pd 1222)
Length = 167
Score = 33.5 bits (73), Expect = 5.4
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Frame = +1
Query: 370 VKRVATGPKNVPYLVTHDGR-TIR-------YPDPLIKVNDSIQLDIATTKIMDSSSLSP 525
V + GPK++P+L GR T R + + S LD A + D SL+
Sbjct: 15 VALIVIGPKDLPHLFHSLGRITARARSMAREFSSAMEDAAKSAGLDEAGNALRDVKSLTS 74
Query: 526 ----GTCV*SREAVTWGVWAPSCPARDIPA-PSTLCTSRTPRDTPSPRG*TTCS*SARHE 690
G R A + W P P+R A P T P D P+P G + S +A
Sbjct: 75 KKALGLDALERAADRFEKWEPKAPSRSTQAVPDPGATGPEPGDGPNPAGSPSDSPAASGS 134
Query: 691 GVHLAAA 711
G A A
Sbjct: 135 GPEAAPA 141
>UniRef50_Q0C5M9 Cluster: Putative uncharacterized protein; n=1;
Hyphomonas neptunium ATCC 15444|Rep: Putative
uncharacterized protein - Hyphomonas neptunium (strain
ATCC 15444)
Length = 240
Score = 32.7 bits (71), Expect = 9.4
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -2
Query: 707 AARCTPSCLADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQV 528
A C +C+ EHV+ P G+ V+GA + GA P +T + +
Sbjct: 14 ACLCLSACITQREHVLAPDAWGIVIDARQGQPVQGAQVRYP-EVGALAPVMTDTDGGFTL 72
Query: 527 PGLKLDESIIFVVAMSNWMESLT--LISGSG 441
PGL D+ I + M SLT +S SG
Sbjct: 73 PGL-TDKRTIVALPMGGVYRSLTEVRVSASG 102
>UniRef50_Q5KD01 Cluster: Nucleus protein, putative; n=1;
Filobasidiella neoformans|Rep: Nucleus protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1138
Score = 32.7 bits (71), Expect = 9.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 719 LCRAAARCTPSCLADYEHVVQPRGEGVSRGVLDVHNVEGAGMSL 588
LCR A +C + +AD+ H+ Q RG GV +H + AG +L
Sbjct: 768 LCRKAMQCALTIIADHVHISQ-RGMMTYYGVHVIHQLAQAGRTL 810
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 50 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 211
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,473,608
Number of Sequences: 1657284
Number of extensions: 18404295
Number of successful extensions: 57229
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 53909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57163
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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