Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00111
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   142   6e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   142   6e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   141   8e-35
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    30   0.29 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.88 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    28   1.2  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.7  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    27   3.6  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   3.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.2  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  142 bits (343), Expect = 6e-35
 Identities = 62/84 (73%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV 
Sbjct: 3   RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QRLIKVDGKVRTD T+P G+
Sbjct: 63  AILMQRLIKVDGKVRTDSTFPTGF 86



 Score =  141 bits (342), Expect = 8e-35
 Identities = 62/82 (75%), Positives = 73/82 (89%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DV+S+EKT E +RL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTI
Sbjct: 88  DVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKI 501
           RYPDPLIKVND+I+L++ T KI
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKI 169



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/58 (62%), Positives = 47/58 (81%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
           IKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  142 bits (343), Expect = 6e-35
 Identities = 62/84 (73%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV 
Sbjct: 3   RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QRLIKVDGKVRTD T+P G+
Sbjct: 63  AILMQRLIKVDGKVRTDSTFPTGF 86



 Score =  140 bits (339), Expect = 2e-34
 Identities = 61/82 (74%), Positives = 73/82 (89%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DV+S++KT E +RL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTI
Sbjct: 88  DVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKI 501
           RYPDPLIKVND+I+L++ T KI
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKI 169



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/58 (62%), Positives = 47/58 (81%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 683
           IKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  141 bits (342), Expect = 8e-35
 Identities = 62/82 (75%), Positives = 73/82 (89%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DV+S+EKT E +RL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTI
Sbjct: 88  DVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKI 501
           RYPDPLIKVND+I+L++ T KI
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKI 169



 Score =  140 bits (339), Expect = 2e-34
 Identities = 61/84 (72%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV 
Sbjct: 3   RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QRLI+VDGKVRTD T+P G+
Sbjct: 63  AILMQRLIQVDGKVRTDSTFPTGF 86



 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 37/59 (62%), Positives = 48/59 (81%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKA 686
           IKF++    M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+A
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEA 231


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 456 QSQRFHPVRHCNYEDYGLIKFES 524
           ++++ HPVRH  YED   + FE+
Sbjct: 5   ENEKIHPVRHSKYEDKSKLPFET 27


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 674 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 576
           Y  V+ P  EG     LD+H+   A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 253 ISSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 95
           +SS+   + P+ P++   +E  F  NFQ      S L  IP++   G ++A+++GT
Sbjct: 26  LSSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 668 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDESIIF 495
           H   P GEG  R V    N        + +  +H+P+   S+ +T  PGLK + +  F
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSF 341


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 626 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDESI 501
           LD+H V     S+   D A T  + AS DH  VPG K + ++
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFETNL 211


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 513 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 617
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 256  DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 432
            +V S+EK N+++ + Y+V  +     +   +   K+  ++ ++   KNVP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 433  IR 438
            ++
Sbjct: 1778 LK 1779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,889
Number of Sequences: 5004
Number of extensions: 71515
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)