Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00111
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   127   7e-30
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    25   1.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.3  
Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    28   5.8  
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    28   5.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.8  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  127 bits (307), Expect = 7e-30
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGYRMLSQLRR 277
           KI+ QR+++VDGKVRT   +P G+  +  + R
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIER 93



 Score =  120 bits (290), Expect = 8e-28
 Identities = 55/91 (60%), Positives = 67/91 (73%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DVV+IE+TNE +R++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTI
Sbjct: 87  DVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTI 146

Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 528
           RYPDP +KVND+I  +I+T KI DS    PG
Sbjct: 147 RYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/61 (65%), Positives = 50/61 (81%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
           +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGK  
Sbjct: 172 VKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGN 231

Query: 690 R 692
           +
Sbjct: 232 K 232


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 25.0 bits (52), Expect(2) = 5.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 572 HHRVPRETSRLLRHCAHQGLHGTH 643
           HH  P        H  H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497



 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 572 HHRVPRETSRLLRHCAHQGLHGTH 643
           HH  P        H  H G HG+H
Sbjct: 532 HHHAPAHHGHHGEHGTHHGHHGSH 555



 Score = 23.4 bits (48), Expect(2) = 1.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 617 AHQGLHGTHLRHEVEQRVHNRQG 685
           AH G HG H  H V    H   G
Sbjct: 572 AHHGHHGHHGSHGVHHGHHESHG 594



 Score = 21.8 bits (44), Expect(2) = 5.0
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 617 AHQGLHGTHLRHEVEQRVHNRQGT 688
           AH G HG H         H   GT
Sbjct: 501 AHHGHHGEHHHAPAHHGHHGEHGT 524


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 313 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 444
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 530 LVYDHGRP*LGACGHHRVPRETSRLLRH 613
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 530 LVYDHGRP*LGACGHHRVPRETSRLLRH 613
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -3

Query: 664 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 503
           L N      P   +    ++ P    +    P+ PK  PP  + K P+  LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -3

Query: 664 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 503
           L N      P   +    ++ P    +    P+ PK  PP  + K P+  LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -3

Query: 664 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 503
           L N      P   +    ++ P    +    P+ PK  PP  + K P+  LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 470  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 306
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 235 YLSCWI*DVVSIEKTNELYRLIYDVKGRFTIHRITPEEA 351
           YL C I +++ + KT +LY+ +  + G+ T + + P EA
Sbjct: 283 YLKCNIHELIVLNKTFDLYKFVKVILGK-TENSVHPSEA 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,581,218
Number of Sequences: 27780
Number of extensions: 426878
Number of successful extensions: 1294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)