Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00110
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    38   0.002
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    38   0.002
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    38   0.002
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
           MGRVIRAQRK +G +F +HT  RKGA +L
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQL 28



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
           R+G A L  R+LD+AERHGYI+GVV+
Sbjct: 22  RKGAAQL--RTLDFAERHGYIRGVVQ 45


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
           MGRVIRAQRK +G +F +HT  RKGA +L
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQL 28



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
           R+G A L  R+LD+AERHGYI+GVV+
Sbjct: 22  RKGAAQL--RTLDFAERHGYIRGVVQ 45


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
           MGRVIRAQRK +G +F +HT  RKGA +L
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQL 28



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
           R+G A L  R+LD+AERHGYI+GVV+
Sbjct: 22  RKGAAQL--RTLDFAERHGYIRGVVQ 45


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 QPALLFLRSIISKFVNAKRSIWILLVNWFISAKFFLN 289
           Q AL+    II+  + A  S  +LL+ W +   FF N
Sbjct: 330 QQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFRN 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,320
Number of Sequences: 5004
Number of extensions: 52313
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)