Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00110
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                28   6.4  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +1

Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
           MGRVIR QRKGAGS+F SHT  RKGA  L
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANL 29



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +2

Query: 593 FSFLTRRRGKALLNYRSLDYAERHGYIKGVVK 688
           F+  T+ R K   N R  DYAERHGYIKGVVK
Sbjct: 16  FTSHTKHR-KGAANLRVHDYAERHGYIKGVVK 46


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 387 YDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQLTRR 247
           +++ +   +F+ +VK+H + YKD+ +     + FK NL  I+   RR
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRR 593


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 426  VMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADREL 301
            V+AS A+ DP   Y L   K+LF + ++  + E  DD DR L
Sbjct: 1941 VVASLAEVDPMYQYSLKYFKQLFNACIE--SSEKTDDLDRRL 1980


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 292  LIMQLSVGIILVFPVMFFDETLEQFFGLIEVIMS 393
            L+M+     +LV P++FF+  +E F G+ ++I S
Sbjct: 1199 LVMEYVERPVLVPPLIFFNHVIEMFVGISQMIRS 1232


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 401  SVSADDAITTVAINNATLTKFIFAQCINSGTGLLVPVLLSCRIR 532
            S +  D  +TV +  + LT    A C  + TGLL  V  SC+ R
Sbjct: 1165 SFTRSDKESTVLVGYSALTLIGVALCSCTVTGLLFAVYYSCKTR 1208


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 375 QAKELFESFVK-EHNREYKDDADRELHYQSFKKNL 274
           Q  E +++FVK +H +  K  ADREL  +  +K++
Sbjct: 265 QQSEQYQAFVKRQHVKRTKHPADRELEIRELRKSV 299


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 593 FSFLTRRRGKALLNYRSLDYAERHGY 670
           FSF T R+G AL+ Y  L+Y+ R  Y
Sbjct: 216 FSFHTVRQGCALILYNHLEYSRRSQY 241


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 405 TDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAE 268
           +D P+  +L+  + LFE+   +      DD  RE+ + +FK  L E
Sbjct: 520 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 565


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 399 PPRHY--DLNQAKELFESFVKEHNREYK 322
           PP  Y  DLN AKEL E+ +K+   E K
Sbjct: 225 PPEEYYIDLNHAKELLENCLKQATSESK 252


>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 405 TDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAE 268
           +D P+  +L+  + LFE+   +      DD  RE+ + +FK  L E
Sbjct: 139 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,734,931
Number of Sequences: 59808
Number of extensions: 375430
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)