Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00110
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 44 4e-04
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 44 4e-04
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 44 4e-04
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 38 0.046
D63481-1|BAA09768.3| 1630|Homo sapiens KIAA0147 protein protein. 30 7.0
BC044627-1|AAH44627.1| 682|Homo sapiens SCRIB protein protein. 30 7.0
BC014632-1|AAH14632.2| 832|Homo sapiens SCRIB protein protein. 30 7.0
AY062238-1|AAL38976.1| 1630|Homo sapiens scribble protein. 30 7.0
AF271734-1|AAP88018.1| 1601|Homo sapiens SCRIB1 variant N1 protein. 30 7.0
AF240677-1|AAP88017.1| 1630|Homo sapiens CRIB1 protein. 30 7.0
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPKL 636
MGRVIR QRKGAGSVF +H RKGA +L
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARL 29
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 23 RKGAARL--RAVDFAERHGYIKGIVK 46
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 37.5 bits (83), Expect = 0.046
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVVK 688
R+G A L R++D+AERHGYIKG+VK
Sbjct: 19 RKGAARL--RAVDFAERHGYIKGIVK 42
Score = 36.3 bits (80), Expect = 0.11
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1
Query: 562 IRAQRKGAGSVFVSHT*KRKGAPKL 636
IR QRKGAGSVF +H RKGA +L
Sbjct: 1 IRGQRKGAGSVFRAHVKHRKGAARL 25
>D63481-1|BAA09768.3| 1630|Homo sapiens KIAA0147 protein protein.
Length = 1630
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 801 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 847
>BC044627-1|AAH44627.1| 682|Homo sapiens SCRIB protein protein.
Length = 682
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 97 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 143
>BC014632-1|AAH14632.2| 832|Homo sapiens SCRIB protein protein.
Length = 832
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 3 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 49
>AY062238-1|AAL38976.1| 1630|Homo sapiens scribble protein.
Length = 1630
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 801 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 847
>AF271734-1|AAP88018.1| 1601|Homo sapiens SCRIB1 variant N1 protein.
Length = 1601
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 772 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 818
>AF240677-1|AAP88017.1| 1630|Homo sapiens CRIB1 protein.
Length = 1630
Score = 30.3 bits (65), Expect = 7.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 307 RAALSIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEEQQSRLGLRLP 164
R A + +Q ++ R++ ++ +N T + DY+P E++ GLRLP
Sbjct: 801 RGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGG-GLRLP 847
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,254,030
Number of Sequences: 237096
Number of extensions: 1706370
Number of successful extensions: 3392
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3392
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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