Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00110
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.70 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -2

Query: 399 PPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEI 265
           P   ++LN   ++ E  + +++R  +  +DR +  ++ KKNL+++
Sbjct: 317 PELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKV 361


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 451 CGVVNSHSSNGVIGG 407
           CGV N H   G++GG
Sbjct: 329 CGVHNLHGMPGILGG 343


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 442 VNSHSSNGVIGGYRSS 395
           V+SHSSNG+  G+  S
Sbjct: 76  VSSHSSNGIHTGFGGS 91


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 393 RHYDLNQAKELFESFVKEHNREYKD 319
           RHYD  + +E  E++  EH   + D
Sbjct: 174 RHYDRYKEEESNENYNWEHKETHID 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,415
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)