Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00110
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 47 1e-05
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 47 1e-05
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 43 2e-04
At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC... 37 0.015
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC... 37 0.015
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ... 32 0.32
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote... 31 0.74
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 30 1.7
At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 30 1.7
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi... 28 5.2
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ... 28 5.2
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr... 27 9.2
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPK 633
MGRVIRAQRKGAGSVF SHT RKG K
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAK 28
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVV 685
R+G A +RSLD+ ER+GY+KGVV
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVV 45
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +1
Query: 550 MGRVIRAQRKGAGSVFVSHT*KRKGAPK 633
MGRVIRAQRKGAGSVF SHT RKG K
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAK 28
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVV 685
R+G A +RSLD+ ER+GY+KGVV
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVV 45
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +1
Query: 550 MGRVIRAQRKG-AGSVFVSHT*KRKGAPK 633
MGRVIRAQRKG AGSVF SHT RKG K
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAK 29
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 611 RRGKALLNYRSLDYAERHGYIKGVV 685
R+G A +RSLDY ER+GY+KG+V
Sbjct: 24 RKGPA--KFRSLDYGERNGYLKGLV 46
>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 288
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -2
Query: 396 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQ 259
P H + ++ ELFES++ EH++ YK ++ ++ F++NL I+Q
Sbjct: 38 PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQ 84
>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 355
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -2
Query: 396 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINQ 259
P H + ++ ELFES++ EH++ YK ++ ++ F++NL I+Q
Sbjct: 38 PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQ 84
>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 334
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = -2
Query: 456 VSV-ALLIATVVMASSADTDPPR-HYDLNQAK--ELFESFVKEHNREYKDDADRELHYQS 289
VSV ++ +A +++ R H LN+ + + ++ + +R YKD++++E+ +
Sbjct: 2 VSVRSVFVALTILSMDLRISQARPHVTLNEQSIVDYHQQWMTQFSRVYKDESEKEMRLKV 61
Query: 288 FKKNL 274
FKKNL
Sbjct: 62 FKKNL 66
>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
kinase, putative
Length = 785
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -2
Query: 549 DYDPWCRIRHESRTGTSKPVPLLIHCAKMNFVSVALLIATVVMASSADTDPPRHYDLNQA 370
D PW R+RH+ GT++ + L H V + AT+++ SS + PR D
Sbjct: 612 DSAPW-RLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQE---PRLADFGLV 667
Query: 369 KELFESF 349
K L E F
Sbjct: 668 KLLDEQF 674
>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 345
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 357 ESFVKEHNREYKDDADRELHYQSFKKNLAEINQLTRR 247
E ++ +REY+D+ ++ + FKKNL I ++
Sbjct: 40 EQWMARFSREYRDELEKNMRRDVFKKNLKFIENFNKK 76
>At1g29090.1 68414.m03561 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 355
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = -2
Query: 459 FVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 280
F+ V+L I ++ + S T ++ A E + ++ +R Y D+ ++++ + FKK
Sbjct: 15 FMLVSLTILSMNLKVSQATSRVTFHEPIVA-EHHQQWMTRFSRVYSDELEKQMRFDVFKK 73
Query: 279 NLAEINQLTRR 247
NL I + ++
Sbjct: 74 NLKFIEKFNKK 84
>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
protein and genefinder
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 108 FVWNSIPID*SRRTYVFLAGSLNPNLLCCSSGV*SANLLMPNV 236
FVWN+I SR ++ +A S+ ++LC S V L P+V
Sbjct: 90 FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132
>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 348
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 372 AKELFESFVKEHNREYKDDADRELHYQSFKKNL 274
A E E ++ NR Y D+ ++ + FKKNL
Sbjct: 31 AIEKHEQWMARFNRVYSDETEKRNRFNIFKKNL 63
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
protein (AALP) identical to AALP protein GI:7230640 from
[Arabidopsis thaliana]; similar to barley aleurain
Length = 358
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 295 SIIQEKLGRDKPIDEKNPYTTFGINKFADYTPEE-QQSRLG 176
SI +E L + ++K G+N+FAD T +E Q+++LG
Sbjct: 81 SIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLG 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,936
Number of Sequences: 28952
Number of extensions: 265881
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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