Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00108
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 132 2e-31
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 130 6e-31
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 112 2e-25
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 29 2.8
12_02_1136 - 26381025-26381408,26381661-26381804,26382345-263824... 28 6.5
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.5
08_02_1492 + 27504158-27506098 28 6.5
04_01_0249 - 3284107-3286377 27 8.5
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 8.5
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.5
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 132 bits (319), Expect = 2e-31
Identities = 61/90 (67%), Positives = 74/90 (82%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
NAREAV+HFGPAPG P S+TKPYVR+KG+K
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 202 M--KKPPREGL----IAVVVGTVT 255
M K P R + IAV+VGTVT
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVT 94
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 130 bits (315), Expect = 6e-31
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
NAREAVRHFG APG P SHTKPYVR+KG+K
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 202 MKKPPREGLIAVVVGTVT 255
M + E IAV+VGTVT
Sbjct: 71 M-EGKEENNIAVIVGTVT 87
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 112 bits (270), Expect = 2e-25
Identities = 60/107 (56%), Positives = 73/107 (68%), Gaps = 17/107 (15%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 401
G +D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 402 ----------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG+K
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/78 (43%), Positives = 47/78 (60%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 202 MKKPPREGLIAVVVGTVT 255
M+ +E IAV+VGTVT
Sbjct: 71 ME--GKENQIAVIVGTVT 86
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 512 FLSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 333
FL +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 332 NACTSFFG-NMKSSHRHLRY 276
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>12_02_1136 -
26381025-26381408,26381661-26381804,26382345-26382413,
26382537-26382637,26383488-26383493,26383759-26383996
Length = 313
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/72 (22%), Positives = 30/72 (41%)
Frame = -2
Query: 398 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVPTTTAIKPS 219
L + S S+ + SS S + +S + + H H +++H +P+ ++
Sbjct: 234 LCPAASPSSEQCNPSSVSSLSGSEVSSIYEHEDMDHFHSFDHLRTHFFTPLPSLMDVEHG 293
Query: 218 RGGFFMWRAKRD 183
G F W A D
Sbjct: 294 AGNPFKWTAASD 305
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 355 LLLISWLFVLRLARRQYWYKVSEML 429
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>08_02_1492 + 27504158-27506098
Length = 646
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 311 GNMKSSHRHLRYLVQSHVIVTVPTTTAI--KPSRGG 210
G+ SSH H H T TTTA+ KP+ GG
Sbjct: 309 GSTSSSHHHDALDAVDHAAATTTTTTAMAAKPTGGG 344
>04_01_0249 - 3284107-3286377
Length = 756
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 133 VLRRLFMSRINRPPISVSRLARHMKKPPREGLIAVVVGTVTMT*DCTRY 279
++RRL +S +N + R+ + KKP R + + +G + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 279 VSCTVSRHCDCPHYHGN 229
+ C+ S+ C CPHY G+
Sbjct: 1 MGCSPSKVCSCPHYKGS 17
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +1
Query: 367 SWLFVLRLARRQYWYKVSEMLVRQCV-------TLALLQEHRALTLNPMFAPRDRKS 516
SW V L + Q+WY VS+ L + L L+ + L L PM P S
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNPGLVLGPMLMPSPTSS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,103
Number of Sequences: 37544
Number of extensions: 376179
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -