Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00108
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              103   1e-22
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      30   1.2  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   2.1  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  103 bits (247), Expect = 1e-22
 Identities = 50/84 (59%), Positives = 60/84 (71%)
 Frame = +3

Query: 231 CRGSGDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 410
           C   G   +D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246

Query: 411 QGQRNAREAVRHFGPAPGAPRSHT 482
           QG R AREA RH G APG P S T
Sbjct: 247 QGPRKAREAERHMGLAPGVPHSDT 270



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 39/85 (45%), Positives = 50/85 (58%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169

Query: 181 VSRLARHMKKPPREGLIAVVVGTVT 255
           ++RL R MK    +  I VVVG++T
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSIT 194


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 386 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 276
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 429  REAVRHFGPAPGAPRSHTKPYVRTKGQKKQGPVVV 533
            ++AV+   PAP APR    P V+  G+K+  PV++
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 429  REAVRHFGPAPGAPRSHTKPYVRTKGQKKQ 518
            ++AV+   PAP APR    P V+  G+K+Q
Sbjct: 1202 KDAVKPSRPAPPAPRRPPPPAVKQDGEKEQ 1231


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 379 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMF---APRDRK 513
           V+R   R+ W K  +++V  CV LA++     L +  +F   APR R+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSRQ 81


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 379 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMF---APRDRK 513
           V+R   R+ W K  +++V  CV LA++     L +  +F   APR R+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSRQ 81


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -2

Query: 470 RCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKS-- 297
           RC     + T+  T  +    +  +L+S S+ S    S + SSSS +  +S++ +     
Sbjct: 212 RCQALEHRKTYTTTKTTTANNKIIILSSSSSSSSS-SSSSLSSSSSSPLSSYYHHHHHRR 270

Query: 296 ---SHRHLRYLVQSHVIVTVPTTTAI 228
              +H H  Y +  H I  +  TT I
Sbjct: 271 HHLNHYHHHYHLDDHFIFIIIITTLI 296


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 345 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 476
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 289 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 408
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 333 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 452
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 464  SWSRAKVTHCLTSISLTLYQY 402
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,044
Number of Sequences: 59808
Number of extensions: 407977
Number of successful extensions: 1157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)