Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00108
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   138   3e-33
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.3  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    27   7.6  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   7.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  138 bits (334), Expect = 3e-33
 Identities = 62/86 (72%), Positives = 75/86 (87%)
 Frame = +3

Query: 255 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 434
           +D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+ARE
Sbjct: 88  DDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSARE 147

Query: 435 AVRHFGPAPGAPRSHTKPYVRTKGQK 512
           A +HFGPAPG P SHTKPYVR+KG+K
Sbjct: 148 AEKHFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 39/85 (45%), Positives = 49/85 (57%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S
Sbjct: 3   IDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLS 62

Query: 181 VSRLARHMKKPPREGLIAVVVGTVT 255
           +++LAR ++K   E    V + TVT
Sbjct: 63  LAKLARAVQKAGNENKTVVTLSTVT 87


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 518 LLFLSLGANIGFS-VRARCSWSRAKVTHCLTSISLTLYQYCLLAS-RSTKSQLIK 360
           LL LSL  ++    VR    WS+    H +   S +LY+  LLA+    KS+L+K
Sbjct: 490 LLLLSLVTDVDEKGVRPTVDWSKKSHDHVVILFSHSLYEKILLAAGYDPKSELMK 544


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 292 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 459
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 EPYQPATNLCVSFGAPHEEATS*GFDCRGSGDSHNDVRLY 272
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 64  QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 103


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 EPYQPATNLCVSFGAPHEEATS*GFDCRGSGDSHNDVRLY 272
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 199 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 238


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 120 IQSDRSTPALYEPYQPATNLCVSFGAPHEEATS*GFDCR-GSGDS 251
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 160


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 120 IQSDRSTPALYEPYQPATNLCVSFGAPHEEATS*GFDCR-GSGDS 251
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,427
Number of Sequences: 27780
Number of extensions: 308043
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)