Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    46   4e-06
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    45   5e-06
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   1.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   4.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   5.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.5  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 125 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRARSYLR 268
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R    +R
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60



 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           EL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 57  ELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 125 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRARSYLR 268
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R    +R
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60



 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           EL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 57  ELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 338 SVKNLATCSLR*GRQPPRLITITI 409
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 402 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSL 301
           +V SL G    L +  A+FFT PL ++VCA + +
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADV 577


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 372
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 211  STRSCRTRSI*EEG*ELLKVSKDKRALKFLKRRLGTHIRAKRKR 342
            +TR+C T+S+ EEG     VS + +  +FL   L   I+ K K+
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKR-RFLTDLLKARIKDKVKQ 970


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 133 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 44
           D   A  + S F AFSQ Y  +  +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 176  LQTKHSKFVRDLVREVVGHAQYEKRARSYLRCQKTS 283
            +Q  HSKF  +L +EV+    Y     S + C   S
Sbjct: 1038 IQGNHSKFTTNLQKEVIISPHYFAHCLSEVVCNDNS 1073


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,717
Number of Sequences: 5004
Number of extensions: 23975
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)