Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     62   3e-10
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    61   5e-10
07_03_0078 - 13147741-13148913                                         30   0.80 
11_02_0038 - 7631462-7634428,7635975-7636250                           27   5.6  
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741...    27   7.4  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    27   9.8  

>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           ELLKV KDKRALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 29/73 (39%), Positives = 38/73 (52%)
 Frame = +2

Query: 59  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 238
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 239 YEKRARSYLRCQK 277
           YEKR    L+  K
Sbjct: 56  YEKRITELLKVGK 68


>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           ELLKV KDKRALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 30/73 (41%), Positives = 38/73 (52%)
 Frame = +2

Query: 59  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 238
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 239 YEKRARSYLRCQK 277
           YEKR    L+  K
Sbjct: 56  YEKRITELLKVGK 68


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 162 AGLILMALSVIPLRPADILVVLWPF 88
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 DKRALKFLKRRLGTHIRAKRKREELSNV 360
           DK+ LKFL  R  TH +     E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818


>03_06_0116 +
           31773295-31773603,31773800-31773946,31774080-31774158,
           31777558-31778180
          Length = 385

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRARSYLRCQK 277
           A ++GLQ   +     +  E++ H QY     +YL C+K
Sbjct: 65  AAVQGLQVSPAGAEAAMKAEIMSHPQYSALLAAYLGCKK 103


>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 234 LNMRRGLGVT*GVKRQACSEVLEATIGHTH 323
           L   R LGV+ G+ R+ C E   A  GH H
Sbjct: 851 LTQLRKLGVS-GISRRNCREFCSAISGHAH 879


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,970
Number of Sequences: 37544
Number of extensions: 164606
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)