Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                78   2e-14
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    78   2e-14
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    78   2e-14
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    78   2e-14
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    78   2e-14
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    64   3e-10
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.                30   3.4  
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.                30   3.4  
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.              30   3.4  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 59  ELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%)
 Frame = +2

Query: 53  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 232
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 233 AQYEKRARSYLRCQK 277
           A YE+RA   L+  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 59  ELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%)
 Frame = +2

Query: 53  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 232
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 233 AQYEKRARSYLRCQK 277
           A YE+RA   L+  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 59  ELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%)
 Frame = +2

Query: 53  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 232
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 233 AQYEKRARSYLRCQK 277
           A YE+RA   L+  K
Sbjct: 51  APYERRAMELLKVSK 65


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 59  ELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%)
 Frame = +2

Query: 53  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 232
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 233 AQYEKRARSYLRCQK 277
           A YE+RA   L+  K
Sbjct: 51  APYERRAMELLKVSK 65


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           ELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 59  ELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 35/75 (46%), Positives = 45/75 (60%)
 Frame = +2

Query: 53  MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 232
           MA R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 233 AQYEKRARSYLRCQK 277
           A YE+RA   L+  K
Sbjct: 51  APYERRAMELLKVSK 65


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +1

Query: 262 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 357
           LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
          Length = 6669

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 143  AIRIRPARLKGLQT---KHSKFVRDLVREVVGHAQYEKRARSYLRCQKTSVL 289
            A + RP    G QT   KH+K V+D+V E     QYEK    Y     T +L
Sbjct: 5200 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEKMKDKYTPVPDTPIL 5251


>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
          Length = 3007

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 143  AIRIRPARLKGLQT---KHSKFVRDLVREVVGHAQYEKRARSYLRCQKTSVL 289
            A + RP    G QT   KH+K V+D+V E     QYEK    Y     T +L
Sbjct: 1631 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEKMKDKYTPVPDTPIL 1682


>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
          Length = 2802

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 143  AIRIRPARLKGLQT---KHSKFVRDLVREVVGHAQYEKRARSYLRCQKTSVL 289
            A + RP    G QT   KH+K V+D+V E     QYEK    Y     T +L
Sbjct: 1333 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEKMKDKYTPVPDTPIL 1384


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,184,529
Number of Sequences: 237096
Number of extensions: 841428
Number of successful extensions: 1675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)