Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    66   2e-11
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   6.6  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   6.6  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   6.6  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   6.6  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 378
           E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 61  EMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%)
 Frame = +2

Query: 71  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 250
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 251 ARSYLRCQK 277
               LR  K
Sbjct: 59  VLEMLRISK 67


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 40  SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 213
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 41   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 208
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 209  LVREVVGHAQYE 244
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 41   QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 208
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 209  LVREVVGHAQYE 244
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 40  SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 213
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,589
Number of Sequences: 27780
Number of extensions: 136136
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)