Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00107
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    64   3e-11
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    64   3e-11
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            64   3e-11
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    46   2e-05
At1g34590.1 68414.m04299 hypothetical protein                          28   2.7  

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 34/67 (50%)
 Frame = +2

Query: 77  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAR 256
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 257 SYLRCQK 277
             L+  K
Sbjct: 58  ELLKVGK 64


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 25/67 (37%), Positives = 35/67 (52%)
 Frame = +2

Query: 77  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAR 256
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 257 SYLRCQK 277
             L+  K
Sbjct: 62  ELLKVGK 68


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = +1

Query: 256 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 34/67 (50%)
 Frame = +2

Query: 77  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAR 256
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 257 SYLRCQK 277
             L+  K
Sbjct: 62  ELLKVGK 68


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +1

Query: 289 LKFLKRRLGTHIRAKRKREELSNVLAQMR 375
           LK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92



 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 25/67 (37%), Positives = 35/67 (52%)
 Frame = +2

Query: 77  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAR 256
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 257 SYLRCQK 277
             L+  K
Sbjct: 62  ELLKVAK 68


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 41  QSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 166
           + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 770 KDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,672,386
Number of Sequences: 28952
Number of extensions: 130648
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)