Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00106
         (792 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    56   1e-06

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 36/85 (42%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +3

Query: 333 METTNVPQSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVNAPAKSEPQENTDKPNL 512
           METTNVPQSTN                             KPVNAPAKSEPQENTDKP  
Sbjct: 90  METTNVPQSTNQQQQSQQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPKF 149

Query: 513 ---NQITRTNKLINITI*TRSNKRI 578
              NQ  + N+  N+   T+  K I
Sbjct: 150 EPNNQNQQINQHNNLN--TQQQKNI 172



 Score = 50.4 bits (115), Expect = 5e-05
 Identities = 27/62 (43%), Positives = 27/62 (43%)
 Frame = +2

Query: 578 INGNFGGPNKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARNQQRNSNMRGPP 757
           INGNFGGPNKQ                                   ARNQQRNSNMRGPP
Sbjct: 172 INGNFGGPNKQGGSWNHGGGPGNKQGNKPFGSKSSGGPLGSGGPGPARNQQRNSNMRGPP 231

Query: 758 GQ 763
           GQ
Sbjct: 232 GQ 233



 Score = 36.3 bits (80), Expect = 0.88
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 SRFEHNRPXXXXXXXRPSNEKAT 243
           SRFEHNRP       RPSNEKAT
Sbjct: 37  SRFEHNRPQQGQGGQRPSNEKAT 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,934,359
Number of Sequences: 1657284
Number of extensions: 6012840
Number of successful extensions: 15817
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15810
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)