Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00106
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   0.52 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.5  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 71  CILRTRTFLF*YCYFYFN 18
           C+++  T +F +CY Y+N
Sbjct: 261 CLIQFNTIVFSFCYCYYN 278



 Score = 25.4 bits (53), Expect = 0.52
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 71  CILRTRTFLF*YCYFYFNIYSR 6
           C+++  T +F +CY Y++I  R
Sbjct: 542 CLIQFNTIVFAFCYCYYSISIR 563


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 181 ISNYEILCYYHDDLLAVEAAVVHQILFDCRSYSWLAF 71
           +S YEI  + H+D   +      Q+ F  R   W+ F
Sbjct: 797 MSFYEICDFLHEDNTTLVWDNEQQVPFAYRGNQWVGF 833


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 205 PVEVYYAQISNYEILCYYHD 146
           P+E   AQ++N E+   +HD
Sbjct: 15  PIEKTKAQLANKELWDQFHD 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,785
Number of Sequences: 336
Number of extensions: 1688
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)