Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00105
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 153 4e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 66 4e-12
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 66 6e-12
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 43 4e-05
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 7.2
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 26 7.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 153 bits (370), Expect = 4e-38
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
V AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADE 252
TEAESNMNDLVSEYQQYQEA DE
Sbjct: 409 TEAESNMNDLVSEYQQYQEAGIDE 432
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 66.5 bits (155), Expect = 4e-12
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Frame = +1
Query: 4 KTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 159
K +CD PP+ ++ A + N+T+I E + R+ +F M+ ++AF+HWY GE
Sbjct: 352 KIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 411
Query: 160 GMDEMEFTEAESNMNDLVSEYQQ 228
GM+E EF+EA ++ L +Y++
Sbjct: 412 GMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 66.1 bits (154), Expect = 6e-12
Identities = 26/70 (37%), Positives = 45/70 (64%)
Frame = +1
Query: 46 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 225
A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 437
Query: 226 QYQEATADEE 255
+ + + D E
Sbjct: 438 EVGQDSMDNE 447
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 40 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DL 210
+++ + N T+I LFKR +Q+ + +R AFL Y E + E + E +S+ + DL
Sbjct: 372 RVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431
Query: 211 VSEYQQYQE 237
++EY+ ++
Sbjct: 432 INEYEACED 440
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 64 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 171
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 58 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 234
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 440 KLPVMTNYLNEHNLFNTFL 496
K+ ++L EHN+FNTFL
Sbjct: 577 KITDCLSFLLEHNIFNTFL 595
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 617 VSNFDPPFCFCCTYYVNKK 561
VSN PPF C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 546 QPLQISDL-ALNEAGGISRNVLNRLCSFK 463
+P Q+ + + EAGG+SR+ LN+L K
Sbjct: 86 KPEQVVEYDTITEAGGLSRDYLNKLAVLK 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,960
Number of Sequences: 5004
Number of extensions: 55456
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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