Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00105
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 673 LCATKIKWHRCP 638
           LC T   WH CP
Sbjct: 466 LCNTLHHWHHCP 477


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +2

Query: 689 CCHERQTFNCDGFSNRSFVSDD---NQY 763
           CC  R   +  G SNRS  S +   NQY
Sbjct: 88  CCGMRWPGDATGLSNRSSTSSNDPKNQY 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 191 SASVNSISSMPSPVYQCKKALR-LNIAVN 108
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,176
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)