Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00105
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 171 6e-43
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 170 8e-43
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 169 1e-42
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 169 1e-42
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 169 1e-42
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 169 2e-42
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 166 2e-41
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 165 4e-41
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 162 3e-40
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 72 4e-13
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 72 4e-13
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 71 7e-13
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 71 7e-13
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 71 7e-13
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 70 2e-12
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein... 28 6.3
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 28 6.3
At2g24340.1 68415.m02909 hypothetical protein 28 6.3
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 171 bits (415), Expect = 6e-43
Identities = 75/85 (88%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK++VCDIPP+GLKMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 350 VKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 409
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLV+EYQQYQ+ATADEE
Sbjct: 410 TEAESNMNDLVAEYQQYQDATADEE 434
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 170 bits (414), Expect = 8e-43
Identities = 76/86 (88%), Positives = 84/86 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEEQ 258
TEAESNMNDLVSEYQQYQ+ATADEE+
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADEEE 434
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 169 bits (412), Expect = 1e-42
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATADEE
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADEE 433
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 169 bits (412), Expect = 1e-42
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATADEE
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADEE 433
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 169 bits (412), Expect = 1e-42
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATADEE
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADEE 433
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 169 bits (410), Expect = 2e-42
Identities = 74/85 (87%), Positives = 84/85 (98%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK++VCDIPP G+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 350 VKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 409
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATADEE
Sbjct: 410 TEAESNMNDLVSEYQQYQDATADEE 434
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 166 bits (403), Expect = 2e-41
Identities = 74/85 (87%), Positives = 83/85 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK++VCDI PRGL MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATAD+E
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADDE 433
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 165 bits (400), Expect = 4e-41
Identities = 73/86 (84%), Positives = 84/86 (97%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK++VCDI P+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEEQ 258
TEAESNMNDLV+EYQQYQ+ATA EE+
Sbjct: 409 TEAESNMNDLVAEYQQYQDATAGEEE 434
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 162 bits (393), Expect = 3e-40
Identities = 72/86 (83%), Positives = 82/86 (95%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VK++VCDI P GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEEQ 258
TEAESNMNDLV+EYQQYQ+AT EE+
Sbjct: 409 TEAESNMNDLVAEYQQYQDATVGEEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEEQ 258
+Y++ D+E+
Sbjct: 431 DYEEVGAEGGDDEE 444
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEEQ 258
+Y++ D+E+
Sbjct: 431 DYEEVGAEGGDDEE 444
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 71.3 bits (167), Expect = 7e-13
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEE 255
+Y++ D+E
Sbjct: 431 DYEEVGAEGGDDE 443
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 71.3 bits (167), Expect = 7e-13
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEE 255
+Y++ D+E
Sbjct: 431 DYEEVGAEGGDDE 443
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 71.3 bits (167), Expect = 7e-13
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEE 255
+Y++ D+E
Sbjct: 431 DYEEVGAEGGDDE 443
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADEE 255
+Y++ A+++
Sbjct: 431 DYEEVGGEGAEDD 443
>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
similar to SP|O15173 Membrane associated progesterone
receptor component 2 (Steroid receptor protein DG6)
{Homo sapiens}; contains Pfam profile PF00173:
Heme/Steroid binding domain
Length = 245
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 613 RILIRHFVSVAHIM*IKSVYFRSAFTNFRSSSQRGWWNIKE 491
R L+ FV V I+ + S+YFRS+F + + Q+ ++ +E
Sbjct: 6 RFLLSPFVGVTFIVVLVSLYFRSSFKSPQHQYQKRLFSAEE 46
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 563 FYLHNMCN-RNKMADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNC 718
FYLH C ++ D S T P C+ C K G C ++TFNC
Sbjct: 571 FYLHVQCAIASEPLDHPSHIHPLYLTSKPDEEQRKCSVCKKSGHCPTKETFNC 623
>At2g24340.1 68415.m02909 hypothetical protein
Length = 322
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 34 GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 153
GLK+ AT G T + E + + + +F+HW T
Sbjct: 186 GLKIGATTSGVKTKVDEDIEPLCRHYKCATMDSSFIHWIT 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,210
Number of Sequences: 28952
Number of extensions: 284235
Number of successful extensions: 695
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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